Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq13 87.8 2e-12 seq28 84.2 2e-11 seq299 82.4 7e-11 >seq13 Length=4112475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| | || || |||||||| ||| || || | | Sbjct 3687040 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687099 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||| ||| ||||||||||| | || ||| || Sbjct 3687100 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687159 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | | |||||||| ||||| |||||||||||| | ||| | | || ||||| Sbjct 3687160 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687219 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || || || |||||| ||||| | ||| | |||||||| Sbjct 3687220 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGG 3687267 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| | || || |||||||| ||| || || | | Sbjct 3687724 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687783 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||| ||| ||||||||||| | || ||| || Sbjct 3687784 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687843 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | | |||||||| ||||| |||||||||||| | ||| | | || ||||| Sbjct 3687844 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687903 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || || || |||||| ||||| | ||| | |||||||| Sbjct 3687904 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGG 3687951 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| |||| ||| || || | | |||||||| ||||| ||||||||| Sbjct 3687590 GATAAAGAAGGAATGCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAA 3687649 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| | | || ||||| || |||||||| || || |||||| ||||| | Sbjct 3687650 GACGGGAGAACCCTCTCAGACTACAACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTT 3687709 Query 29175 CGATTACGAGGAGG 29188 ||| | |||||||| Sbjct 3687710 CGACTTCGAGGAGG 3687723 >seq28 Length=1782156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || | || || |||||||| || ||| ||| || | Sbjct 1076897 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTCGAAGCCTCT 1076838 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| ||||| ||||| | ||| |||||| Sbjct 1076837 GACACTATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAG 1076778 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGATTACA 29139 || ||| | ||||| || || |||||||| || ||| | | ||| | | ||||||| Sbjct 1076777 CAGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTT--CAGATTACA 1076720 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | |||||||||||||| || |||||| | || | ||| | |||| || Sbjct 1076719 ACATTCAGAAGGAATCAACACTTCACCTTGTACTTCGACTGAGAGGTGG 1076671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || | || || |||||||| || ||| ||| || | Sbjct 1077809 ATGCAAATCTTTGTTAAGACTCTCACAGGAAAAACCATCACTTTGGAAGTTGAAGCCTCT 1077750 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||||| ||||| ||||| | || ||| || Sbjct 1077749 GACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGACCAG 1077690 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGATTACA 29139 |||||| | ||||| || || |||||||| || ||| | | ||| | | ||||| | Sbjct 1077689 CAAAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGACGCACACTTT--CAGATTATA 1077632 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||||||||||| ||| | || | ||| | |||| || Sbjct 1077631 ATATTCAGAAGGAATCTACTCTCCACCTTGTACTTCGACTGAGAGGTGG 1077583 >seq299 Length=124767 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/116 (77%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCC 29132 |||||| |||||| | || ||||| || ||||| || |||||| || || || | | Sbjct 103281 AGATCAGCAAAGATTAATTTTTGCTGGAAAACAGCTAGAAGATGGTCGAACCCTTT--CA 103338 Query 29133 GATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||||||||| ||||||||| | || |||| ||||| ||||||| || Sbjct 103339 GATTATAATATTCAGAAAGAATCTACTTTGCATTTGGTCTTACGTCTACGAGGTGG 103394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428314189398590