Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 5e-12 >seq13 Length=4112475 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| ||||| || | ||||||| || | ||||||||||| || ||||| ||||| | Sbjct 3687725 TTCCTCCTCGAAGTCGAAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTG 3687666 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| |||| ||||| || ||||| ||| | || | | ||||||||| | Sbjct 3687665 AGAGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3687606 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 ||| ||||| || || ||||| |||||| | | | || || | ||| Sbjct 3687605 GCATTCCTTCTTTATCTTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTA 3687546 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||| | || || || | |||||| ||||| || |||||| Sbjct 3687545 CCTCCAGGGTGATGATTTTCCCCGTGAGCGTTTTTACAAAGATCTGCATT 3687496 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 ||||||| || || | | || | |||||| || ||||||||||| ||||| ||||| | Sbjct 3688409 TTCCCCCCCGAAGACGTAATACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTCTG 3688350 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || ||| |||| ||||| |||||||| ||| | || | | ||||||||| | Sbjct 3688349 AGAGCGTTCTCCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3688290 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||| || || ||||| |||||| | | | || || | ||| Sbjct 3688289 GAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTA 3688230 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||| || || || | |||||| ||||| || |||||| Sbjct 3688229 CCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCATT 3688180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422237698825448