Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13 111 1e-19 seq28 107 2e-18 >seq13 Length=4112475 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || || ||||||||| | || ||||| || || |||||||| || Sbjct 3685706 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAG 3685647 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | | || || || || || ||||| |||| | ||||||||| || ||||| Sbjct 3685646 AGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3685587 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690 || || || || ||| ||| || ||| || | || | |||||| | ||| || || Sbjct 3685586 ATTCCTTCTTTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCT-TCTAC 3685528 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | ||||| || ||||| |||||||||||||||||||| Sbjct 3685527 CTCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 3685480 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || || ||||||||| | || |||||||| || |||||||| || Sbjct 3688179 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3688120 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | | ||| || || || || ||||| |||| | ||||||||| || ||||| Sbjct 3688119 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3688060 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || || ||| || ||| || | ||| | ||||| | ||| ||| Sbjct 3688059 ATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACC 3688000 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || || ||||||||||| |||||||| Sbjct 3687999 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687953 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || || ||||||||| | || |||||||| || |||||||| || Sbjct 3685934 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3685875 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | | ||| || || || || ||||| |||| | ||||||||| || ||||| Sbjct 3685874 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3685815 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || || ||| || ||| || | ||| | ||||| | ||| ||| Sbjct 3685814 ATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACC 3685755 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || || ||||||||||| || ||||| Sbjct 3685754 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3685708 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || || ||||||||| | || |||||||| || |||||||| || Sbjct 3687267 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3687208 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | | ||| || || || || ||||| |||| | ||||||||| || ||||| Sbjct 3687207 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687148 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || ||| ||| ||| || || | || | ||||| | ||| ||| Sbjct 3687147 ATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACC 3687088 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || || ||||||||||| || ||||| Sbjct 3687087 TCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687041 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || || ||||||||| | || |||||||| || |||||||| || Sbjct 3687951 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3687892 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | | ||| || || || || ||||| |||| | ||||||||| || ||||| Sbjct 3687891 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687832 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || ||| ||| ||| || || | || | ||||| | ||| ||| Sbjct 3687831 ATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACC 3687772 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || || ||||||||||| || ||||| Sbjct 3687771 TCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687725 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || || ||||||||| | || ||||||||||| |||||||| || Sbjct 3687495 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTGAG 3687436 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | | || ||||| || || ||||| |||| | ||||||||| || ||||| Sbjct 3687435 AGCGTTCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687376 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || || || ||| || || || || | || | ||||| | ||| || || Sbjct 3687375 ATTCCTTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCT-TCTAC 3687317 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | ||| | ||||| || || || ||||||||||| |||||||| Sbjct 3687316 CTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687269 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || || || | ||||||||| ||||| |||||||| || | || | | || Sbjct 3688392 AATACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGCGTTCTCCCGTCT 3688333 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || ||||| ||||| |||| | ||||||||| || ||||| || || || || || Sbjct 3688332 TCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCC 3688273 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 ||| || ||| || | ||| | ||||| | ||| ||||| | ||| | ||| Sbjct 3688272 TGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGTT 3688213 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||||||||| |||||||| Sbjct 3688212 TTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3688181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | || | ||||||||| | || ||||| || || |||||||| || Sbjct 3687723 CCTCCTCGAAGTCGAAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAG 3687664 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || | | || || || || || ||||| |||| | ||||||||| || ||||| Sbjct 3687663 AGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGC 3687604 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || ||| ||| || ||| || | ||| | ||||| | ||| ||| Sbjct 3687603 ATTCCTTCTTTATCTTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACC 3687544 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | |||| || || || ||||||||||| |||||||| Sbjct 3687543 TCCAGGGTGATGATTTTCCCCGTGAGCGTTTTTACAAAGATCTGCAT 3687497 >seq28 Length=1782156 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| || || || |||||||||||||| | |||||| ||| || || || Sbjct 1078062 GTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCTTCAAGTTG 1078121 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| |||| | | ||||| || || || || || ||||| ||| |||||| Sbjct 1078122 TTTACCAGCGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTT 1078181 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | ||| || | ||| | ||| || | ||| ||| ||||| | ||| | ||||| || | Sbjct 1078182 TGCTTTGACATTTTCAATGGTATCTGATGC-CTCAACCTCAAGGGTTATTGTTTTACCAG 1078240 Query 118714 TCAGAGTTTTTACAAAAATCTGCATG 118739 ||| || || ||||| ||||||||| Sbjct 1078241 TCAATGTCTTAACAAAGATCTGCATG 1078266 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | ||| || || || |||||||||||||| | |||||| |||||| || || Sbjct 1076694 GTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCCTCAAGTTG 1076753 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| |||| | | ||||||||| || || || || ||||| ||| |||||| Sbjct 1076754 TTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTT 1076813 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | ||| | ||||| | | ||||| || | || | ||||| || || Sbjct 1076814 GGCTTTGACATTTTCAATAGTGTCAGAGGCTTCGACTTCCAAAGTGATGGTTTTTCCTGT 1076873 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| Sbjct 1076874 AAGAGTCTTGACGAAGATTTGCAT 1076897 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | |||||| || ||||||||||||||||| | | ||| |||||||| || Sbjct 1076922 GTGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAAAGTATACGCCCGTCCTCGAGTTG 1076981 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| | || | | ||||||||| || || || || ||||| ||| |||||| Sbjct 1076982 TTTACCAGCGAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 1077041 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 ||| || | ||| | || || | ||| || || || | || | ||||| || | Sbjct 1077042 AGCTTTGACATTTTCAATAGTATCTGAAGCT-TCAACTTCCAAAGTGATAGTTTTTCCTG 1077100 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||||| ||||| Sbjct 1077101 TAAGAGTCTTAACGAAAATTTGCAT 1077125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTC 118599 ||||| || || || ||||||||||| | |||| ||| |||||||| ||||| | Sbjct 1077157 GTAGATTCCTTCTGGATGTTGTAATCAG--AAAGTGTACGTCCGTCCTCGAGTTGTTTAC 1077214 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| | || | | |||||||||||| || || || ||||| ||| |||||| || Sbjct 1077215 CAGCGAAAATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTT 1077274 Query 118660 TAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 | || | ||| | || || | ||| || || || | || | ||||| || || ||| Sbjct 1077275 TGACATTTTCAATAGTATCTGAAGCT-TCAACTTCCAAAGTGATGGTTTTTCCTGTAAGA 1077333 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || ||||| ||||| Sbjct 1077334 GTCTTGACGAAAATTTGCAT 1077353 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTCGAGCTGTTTTC 118599 ||||| || || || ||||||||||| | |||| ||| |||||||| ||||| | Sbjct 1077385 GTAGATTCCTTCTGGATGTTGTAATCAG--AAAGTGTACGTCCGTCCTCGAGTTGTTTAC 1077442 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| | || | | |||||||||||| || || || ||||| ||| |||||| || Sbjct 1077443 CAGCGAAAATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTT 1077502 Query 118660 TAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 | || | ||| | || || | ||| || || || | || | ||||| || || ||| Sbjct 1077503 TGACATTTTCAATAGTATCTGAAGCT-TCAACTTCCAAAGTGATGGTTTTTCCTGTAAGA 1077561 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || || ||||| Sbjct 1077562 GTCTTAACGAAGATTTGCAT 1077581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433808309627176