Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq64 113 8e-20 seq250 93.3 8e-14 >seq64 Length=869071 Score = 113 bits (124), Expect = 8e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 189425 GAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAA 189484 ||||| | || || |||||| | ||||||| |||| |||| |||||||||| | | Sbjct 669602 GAAAAGTCTGAGACACATGATGATTTATGGAATGCGTGTCAAAATCAGATGGTGACAACA 669661 Query 189485 GGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGA 189544 |||||||||||| | ||||| ||||||||||||| ||||| ||| | ||||||| | | Sbjct 669662 GGAAAAATGCATGGATTTTTGAGAATGTATTGGGCAAAGAAAATATTAGAATGGAGTGAA 669721 Query 189545 ACACCTGAAGACGCTTT 189561 || |||||| | ||||| Sbjct 669722 ACTCCTGAAAATGCTTT 669738 >seq250 Length=260082 Score = 93.3 bits (102), Expect = 8e-14 Identities = 168/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 135594 TTATA-CAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATA 135652 ||||| |||||| || || ||| || | ||| || | | | || || || ||||||| Sbjct 30021 TTATATCAGATACAGTAGAATGGGCTGCCTGGCAAGATAGAGGTGACCCGGTGTTGCATA 30080 Query 135653 TAGAACTTAG-GAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTA 135711 | || ||||| || ||||| ||| | || | || || || ||| || || || | Sbjct 30081 TCGA-CTTAGTGAAGTGGGCTGATTTATTCTTAATCGCCCCATTAGATGCTAACACACTT 30139 Query 135712 GCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGAT 135771 | || ||||||| |||||||||||||||| | |||| | | | | | |||||| || Sbjct 30140 GGTAAGATAGCTAGTGGTATATGCGATAATATTTTGACTTGCGTCGCACGTGCCTGGAAT 30199 Query 135772 ACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATT 135831 | || ||| | | || |||||||| |||||||| ||||||||||| ||| || Sbjct 30200 CCTTCAAAGCCATTGGTGTTTTGTCCTGCTATGAATACAAAGATGTGGGAACACCCTGTT 30259 Query 135832 AC 135833 || Sbjct 30260 AC 30261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923148586047120