Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq41 107 2e-18 seq116 105 8e-18 seq84 105 8e-18 seq120 104 3e-17 seq28 91.5 2e-13 seq77 89.7 6e-13 seq61 89.7 6e-13 seq390 87.8 2e-12 seq13 84.2 3e-11 >seq41 Length=2549405 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2038998 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2039057 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 2039058 TACTACCGAGGATT 2039071 >seq116 Length=2335868 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2186720 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2186661 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 2186660 TACTACCGAGGAT 2186648 >seq84 Length=5494452 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 166318 AAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 166377 Query 60118 CACCACTATACTACCGAGGAT 60138 |||||||||||||||||||| Sbjct 166378 GACCACTATACTACCGAGGAT 166398 >seq120 Length=4136026 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 3255226 AAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 3255285 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 3255286 CTGACCACTATACTACCGAGGA 3255307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | |||| |||||||| ||||||||||||||||||||| ||||| ||| Sbjct 3263957 TTTCTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCG 3263898 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 3263897 CTATACTATCGAGGA 3263883 >seq28 Length=1782156 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||| ||||| | || || ||| | || || || || ||||||||||| Sbjct 1077847 TCCTTCTGAATATTATAATCTGAAAGTGTGCGCCCATCCTCAAGTTGTTTACCAGCGAAG 1077906 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | || |||||| || | || | | ||||| | | ||| |||||| || | | Sbjct 1077907 ATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTAT-CTTGAATTTTTGCCTTTACATT 1077965 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| | ||| || || | ||||| ||||| || || || ||||| || Sbjct 1077966 CTCAATAGTGTCGGATGCTTCAACTTCCAAGGTGATCGTTTTTCCTGTGAGAGTCTTAAC 1078025 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 1078026 AAAGATTTGCAT 1078037 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42955 GTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 43014 |||| ||||| | || | || ||||| | || || || ||||| || ||||||| Sbjct 1076441 GTCCACCTCTAAGTCGAAGAACTAAATGAAGAGTTGATTCTTTCTGAATGTTATAATCAG 1076500 Query 43015 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCG 43074 || || ||| | || || || ||||| ||||| || || | || |||||| || | || Sbjct 1076501 AAAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGCG 1076560 Query 43075 GCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCC 43133 | | | || |||||| ||| |||||| ||| | || | | ||||| | ||| Sbjct 1076561 GAATTCCTTCTTTGTCC-TGAATTTTTGCTTTTACATTCTCAATAGTGTCCGATGCTTCA 1076619 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || |||||||| || || || ||||| || ||||||||||| Sbjct 1076620 ACTTCCAAAGTAATGGTTTTTCCTGTAAGAGTCTTGACGAAGATTTGCAT 1076669 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| |||||||| | || || ||| | || || || || ||||||||||| Sbjct 1076707 TCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCCTCAAGTTGTTTACCAGCGAAG 1076766 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | || |||||| || | || | | ||||| | | ||| |||| | ||||| | Sbjct 1076767 ATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTAT-CTTGAATTTTGGCTTTGACATT 1076825 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| | ||| || || | ||||||||||| || || || ||||| || Sbjct 1076826 TTCAATAGTGTCAGAGGCTTCGACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTGAC 1076885 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 1076886 GAAGATTTGCAT 1076897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||||| || || || |||| || || || ||||||||||| Sbjct 1077391 TCCTTCTGGATGTTGTAATCAGAAAGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAA 1077450 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | || |||||| |||| || | | ||||| | | ||| |||| | ||||| | Sbjct 1077451 ATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 1077509 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || | ||| || || | ||||||||||| || || || ||||| || Sbjct 1077510 TTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTAAC 1077569 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 1077570 GAAGATTTGCAT 1077581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||| ||||| | || || || | || || || || ||||||||||| Sbjct 1077619 TCCTTCTGAATATTATAATCTGAAAGTGTGCGTCCATCCTCAAGTTGTTTACCAGCGAAG 1077678 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | || |||||||| | || | | ||||| | | ||| |||||| || | | Sbjct 1077679 ATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTAT-CTTGAATTTTTGCCTTTACATT 1077737 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| | ||| || || | ||||||||||| || || || ||||| || Sbjct 1077738 CTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAAC 1077797 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 1077798 AAAGATTTGCAT 1077809 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| |||||||||| || | ||| |||| || || || ||||||||||| Sbjct 1076935 TCCTTTTGAATGTTGTAATCAGAAAGTATACGCCCGTCCTCGAGTTGTTTACCAGCGAAA 1076994 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | || |||||| || | || | | ||||| | | ||| |||| | ||||| | Sbjct 1076995 ATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 1077053 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || | ||| || || | ||||| ||||| || || || ||||| || Sbjct 1077054 TTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATAGTTTTTCCTGTAAGAGTCTTAAC 1077113 Query 43172 AAAGATTTGCAT 43183 || |||||||| Sbjct 1077114 GAAAATTTGCAT 1077125 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||||| || || || |||| || || || ||||||||||| Sbjct 1077163 TCCTTCTGGATGTTGTAATCAGAAAGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAA 1077222 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | || |||||| |||| || | | ||||| | | ||| |||| | ||||| | Sbjct 1077223 ATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 1077281 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || | ||| || || | ||||||||||| || || || ||||| || Sbjct 1077282 TTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTGAC 1077341 Query 43172 AAAGATTTGCAT 43183 || |||||||| Sbjct 1077342 GAAAATTTGCAT 1077353 >seq77 Length=3081630 Score = 89.7 bits (98), Expect = 6e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| || | |||| |||||||| ||||||||||||||||||||| ||| Sbjct 1976378 AAAAATAATCCTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1976319 Query 60116 CTCACCACTATACTACCGAGGATT 60139 || ||| |||||||| |||||||| Sbjct 1976318 CTGACCGCTATACTATCGAGGATT 1976295 >seq61 Length=2289012 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| | |||| || | |||| |||||||| ||||||||||||||||||||| || Sbjct 359034 AAAAATTATTACTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 359093 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||| |||||||| |||||| Sbjct 359094 ACTGACCGCTATACTATCGAGGA 359116 >seq390 Length=553552 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||| |||||||| ||||||||||||||||||||| ||||| ||| ||| Sbjct 143109 CTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCGCTA 143050 Query 60126 TACTACCGAGGATTGAATATATAACTTGAATATT 60159 ||||| |||||| | | |||||||| || || Sbjct 143049 TACTATCGAGGAGT---CAGATAACTTGCATTTT 143019 >seq13 Length=4112475 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | |||| |||||| || | ||| |||||| || || ||||| || | Sbjct 3685707 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGA 3685648 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || | | |||| || || ||||| ||||| || || | ||||||||||| | || Sbjct 3685647 GAGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3685588 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || ||| | ||| | || | ||| | || | | ||||| | ||| | Sbjct 3685587 AATTC-CTTCTTTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTA 3685529 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 | || | ||||||||||| || || || || |||||||| || ||||| ||| Sbjct 3685528 CCTCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCATATTT 3685476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571787736825840