Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 8e-16 seq28 95.1 1e-14 >seq13 Length=4112475 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TC 45183 |||||||| |||||| ||| ||||| ||||||||||| | || ||| || || Sbjct 3687249 ACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTC--TGAGA--GCGTTCTCCCATC 3687194 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||||||| || || || || ||||| ||||| ||||| ||||| | || || || || Sbjct 3687193 TTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATC 3687134 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||| ||| ||| || | | | |||| | |||| ||||||| ||| || || Sbjct 3687133 TTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAGGTGATGGT 3687074 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || |||||||||||||| Sbjct 3687073 TTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687041 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TC 45183 |||||||| |||||| ||| ||||| ||||||||||| | || ||| || || Sbjct 3687933 ACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTC--TGAGA--GCGTTCTCCCATC 3687878 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||||||| || || || || ||||| ||||| ||||| ||||| | || || || || Sbjct 3687877 TTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATC 3687818 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 ||| ||| ||| || | | | |||| | |||| ||||||| ||| || || Sbjct 3687817 TTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAGGTGATGGT 3687758 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || |||||||||||||| Sbjct 3687757 TTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687725 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGG--CGATCGTCGT 45185 |||||||| |||||| ||||||||| ||||||||||| | || || | |||| | Sbjct 3685688 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTC--TGAGAGGGTTCTCCCGTCTT 3685631 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||||||| || || || || ||||| ||||| ||||| ||||| | || || || || Sbjct 3685630 CCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCTT 3685571 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || || || | | | | |||| | | || ||||||| ||| || || | Sbjct 3685570 GAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTACCTCCAGGGTGATGGTTT 3685511 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || ||||| || || ||||| || ||||| || Sbjct 3685510 TCCCAGTCAGTGTTTTTACAAAAATCTGCATATT 3685477 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGG--CGATCGTCGT 45185 |||||||| |||||| ||||||||| ||||||||||| | || || | |||| | Sbjct 3687705 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTC--TGAGAGGGTTCTCCCGTCTT 3687648 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||||||| || || || || ||||| ||||| ||||| ||||||| || || || || Sbjct 3687647 CCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGCATTCCTTCTTTATCTT 3687588 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 ||| || || || | | |||| | |||| ||||||| ||| || | | Sbjct 3687587 GAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGATTT 3687528 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| || || || |||||||| ||||| Sbjct 3687527 TCCCCGTGAGCGTTTTTACAAAGATCTGCAT 3687497 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG----TC 45183 |||||||| |||||| ||| ||||| ||||||||||| | || ||| || || Sbjct 3685916 ACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTC--TGAGA--GCGTTCTCCCATC 3685861 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||||||| || || || || ||||| ||||| ||||| ||||| | || || || || Sbjct 3685860 TTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATC 3685801 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | ||| || || || | | |||| | |||| ||||||| ||| || || Sbjct 3685800 CTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGT 3685741 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || |||||||||||||| Sbjct 3685740 TTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3685708 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGAT----CGTC 45183 |||||||| |||||| ||| ||||| ||||||||||| | || ||| | | || Sbjct 3688161 ACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTC--TGAG--AGCGTTCTCCCATC 3688106 Query 45184 GTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 |||||||| || || || || ||||| ||||| ||||| ||||| | || || || || Sbjct 3688105 TTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATC 3688046 Query 45244 CGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGT 45303 | ||| || || || | | |||| | |||| ||||||| ||| || || Sbjct 3688045 CTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGT 3687986 Query 45304 CTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || |||||||| ||||| Sbjct 3687985 TTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 45124 TAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATC--- 45180 |||||| || |||| || |||||| || ||||||||||| | || ||| || Sbjct 3688393 TAATACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTC--TGAGA--GCGTTCTCC 3688338 Query 45181 -GTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCT 45239 ||| ||||||||||| || || || ||||| ||||| ||||| ||||| | || || | Sbjct 3688337 CGTCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTT 3688278 Query 45240 TGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAA 45299 | ||| ||| || || || | | |||| | |||| ||||||| ||| | Sbjct 3688277 TATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGA 3688218 Query 45300 TCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || || || || || || || |||||||| ||||| Sbjct 3688217 TGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3688181 >seq28 Length=1782156 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| || | ||| | || || || ||||||||||| || || || Sbjct 1077811 CCACCTCTCAGTCGGAGTACAAGATGAAGTGTTGATTCCTTCTGAATATTATAATCTGAA 1077870 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || |||||||| || ||||| ||||| | ||| || || || || Sbjct 1077871 AGTGTGCGCCCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGG 1077930 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || ||||||| ||| || | | | |||| | || || Sbjct 1077931 ATTCCTTCCTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCGGATGCTTCAACT 1077990 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| ||||| || || || |||||||| |||||||||||||| Sbjct 1077991 TCCAAGGTGATCGTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1078037 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| || | ||| | ||| || || ||||||||||| || || || Sbjct 1077583 CCACCTCTCAGTCGAAGTACAAGGTGGAGAGTAGATTCCTTCTGAATATTATAATCTGAA 1077642 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || |||||||| || ||||| ||||| | || ||||| || || Sbjct 1077643 AGTGTGCGTCCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGTGGG 1077702 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || ||||||| ||| || | | | |||| | || || Sbjct 1077703 ATTCCTTCCTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGAGGCTTCAACT 1077762 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || || |||||||| |||||||||||||| Sbjct 1077763 TCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1077809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395055083017738