Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq136 91.5 1e-13 >seq136 Length=558006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 13999 CATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATA 14058 || ||| || || | |||||| ||||| | |||| || ||||||| || || || || Sbjct 338545 CACAAATACCTTCTGACAACCCAGTTCAACGAGTAGTCGGTCCGCAACAAATTCTATGTA 338486 Query 14059 TTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAA 14118 |||| |||| | | ||||||||| ||||| | || ||||| | | || ||||| Sbjct 338485 TTGACACATAAGTTTACAATTCATGCCTATCATTTCGACAGGCAACGCGTCTGTCAAAAA 338426 Query 14119 TTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGG 14178 ||||| ||| || ||||| || || || || ||| | ||| ||| || Sbjct 338425 TTCTTGTTCGATTTCAACAGCATCCTTAATGATTGACGTGACTCGTTCGCAAGATGGTTT 338366 Query 14179 ATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228 | | ||| ||| |||| |||||||||||||| |||||||| | |||| Sbjct 338365 CTGTATTATGTGTCTAAACATTAAACACGCAAAGTCACAATGTAAACCCT 338316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||| || |||||||| | || ||||||||| || || | |||||||| || | || Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 14533 AAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CTGAGTAAAATCTTTCGGCCA 14591 ||||||||||| || | || |||| ||| || | |||| | |||| |||| | | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACT-GAATCGTTCGACAA 337711 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATA 14636 ||| ||||| || || ||||| |||||||| |||||||||| Sbjct 337710 GATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATA 337666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482320409501040