Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq28 113 3e-20 seq13 93.3 3e-14 >seq28 Length=1782156 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| |||||| | ||||||||||||||| || ||||||||||| || | | ||| Sbjct 1076680 AGTCGAAGTACAAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGC 1076739 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| || | |||||| || || |||| | ||| || ||||| ||| | |||||| Sbjct 1076740 CCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCC 1076799 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||||| | || ||||| | | ||| ||||||| || ||| ||| | || Sbjct 1076800 TTATCTTGAATTT-TGGCTTTGACATTTTCAATAGTGTCAGAGGCTTCGACTTCCAAAGT 1076858 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||| || || | || || || || |||||||| Sbjct 1076859 GATGGTTTTTCCTGTAAGAGTCTTGACGAAGATTTGCAT 1076897 Score = 107 bits (118), Expect = 1e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||||| | ||||||||||||||| || ||||||||||| || | | ||| Sbjct 1078048 AGTCGGAGTACAAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGC 1078107 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | |||||| || || |||| | |||||| || || || | |||||| Sbjct 1078108 CCATCTTCAAGTTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCC 1078167 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||||| |||| ||||| | | ||| || || | ||| |||| ||| Sbjct 1078168 TTATCTTGAATTT-TTGCTTTGACATTTTCAATGGTATCTGATGCCTCAACCTCAAGGGT 1078226 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || |||| || |||||||| || ||||| || ||||| ||| Sbjct 1078227 TATTGTTTTACCAGTCAATGTCTTAACAAAGATCTGCATGTTT 1078269 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| |||||| | ||| || || ||||| || ||||| || || || | | ||| Sbjct 1077592 AGTCGAAGTACAAGGTGGAGAGTAGATTCCTTCTGAATATTATAATCTGAAAGTGTGCGT 1077651 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| || | |||||| || || |||| | |||||| || || || | |||||| Sbjct 1077652 CCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCC 1077711 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| ||||| | ||| || | ||| ||||||| || || ||| | ||| Sbjct 1077712 TTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTG 1077771 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| || || | || || ||||| |||||||| Sbjct 1077772 ATGGTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1077809 >seq13 Length=4112475 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || |||| || |||| |||||| || || ||||| || ||||||||||| | Sbjct 3685935 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGA 3685876 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||| ||| ||||| ||| |||| | | || || || || Sbjct 3685875 GAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3685816 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| ||||| ||| | | || || || | | | | ||||| | ||| Sbjct 3685815 AATTCCTTCTTTATCCTGAATCT-TCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTA 3685757 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| |||| || || | ||||||||||| ||||||||| Sbjct 3685756 CCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATT 3685707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || |||| || |||| |||||| || || ||||| || ||||||||||| | Sbjct 3687268 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGA 3687209 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||| ||| ||||| ||| |||| | | || || || || Sbjct 3687208 GAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3687149 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||| | | ||| || | | | ||||| | ||| Sbjct 3687148 AATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTAC 3687089 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| |||| || || | ||||||||||| ||||||||| Sbjct 3687088 CTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATT 3687040 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || |||| || |||| |||||| || || ||||| || ||||||||||| | Sbjct 3687952 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGA 3687893 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||| ||| ||||| ||| |||| | | || || || || Sbjct 3687892 GAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3687833 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||| | | ||| || | | | ||||| | ||| Sbjct 3687832 AATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTAC 3687773 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| |||| || || | ||||||||||| ||||||||| Sbjct 3687772 CTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATT 3687724 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || |||| ||| |||| |||||| || || || || || ||||||||||| | Sbjct 3687724 TCCTCCTCGAAGTCGAAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGA 3687665 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||||||| ||| ||||| ||| |||| | | || || || || Sbjct 3687664 GAGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3687605 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 || ||||| ||||| ||| | | || || || | | | | ||||| | ||| Sbjct 3687604 CATTCCTTCTTTATCTTGAATCT-TCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTA 3687546 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| |||| || || | ||||||||||| || |||||| Sbjct 3687545 CCTCCAGGGTGATGATTTTCCCCGTGAGCGTTTTTACAAAGATCTGCATT 3687496 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || |||| || |||| |||||| || || ||||| || ||||||||||| | Sbjct 3688180 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGA 3688121 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||| ||| ||||| ||| |||| | | || || || || Sbjct 3688120 GAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3688061 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| ||||| ||| | | || || || | | | | ||||| | ||| Sbjct 3688060 AATTCCTTCTTTATCCTGAATCT-TCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTA 3688002 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||||| |||| || || | ||||||||||| || |||||| Sbjct 3688001 CCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCATT 3687952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379324684040610