Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 >seq13 Length=4112475 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| | || || ||||| || ||| | || || || | Sbjct 3687041 ATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTCA 3687100 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | ||| |||| ||| ||| | |||||||| | || |||||| Sbjct 3687101 GACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCAG 3687160 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| ||||| |||||||||||| | || | || |||| | Sbjct 3687161 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAAC 3687220 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| |||||||||| || ||| | ||| | || ||||| Sbjct 3687221 ATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGG 3687267 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| | || || ||||| || ||| | || || || | Sbjct 3687725 ATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTCA 3687784 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | ||| |||| ||| ||| | |||||||| | || |||||| Sbjct 3687785 GACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCAG 3687844 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| ||||| |||||||||||| | || | || |||| | Sbjct 3687845 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAAC 3687904 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| |||||||||| || ||| | ||| | || ||||| Sbjct 3687905 ATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGG 3687951 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||| | || || ||||| || ||| | || || || | Sbjct 3687953 ATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTCA 3688012 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||||| || || | || ||| | |||||||| | || |||||| Sbjct 3688013 GACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 3688072 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| ||||| |||||||||||| | || | || |||| | Sbjct 3688073 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAAC 3688132 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| |||||||||| || ||| | ||| | || ||||| Sbjct 3688133 ATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGG 3688179 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || ||||| ||||| | || || ||||| || ||| | || || || | Sbjct 3685708 ATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTCA 3685767 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||||| || || | || ||| | |||||||| | || |||||| Sbjct 3685768 GACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 3685827 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| ||||| |||||||||||| | || | || |||| | Sbjct 3685828 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAAC 3685887 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| |||||||||| || ||| | ||| | || ||||| Sbjct 3685888 ATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGG 3685934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||| | || || ||||| || ||| | || || ||| | Sbjct 3685480 ATGCAGATTTTTGTAAAAACACTGACTGGGAAAACCATCACCCTGGAGGTAGAAGCTTCA 3685539 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | || || | || ||| | |||||||| | || |||||| Sbjct 3685540 GACACCATAGAGAACGTGAAAGCGAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCAG 3685599 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| ||||| ||||||||||| | || | || |||| | Sbjct 3685600 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTACAAC 3685659 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||| ||| |||||||||| || ||| | ||| | || ||||| Sbjct 3685660 ATCCAGAAGGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGG 3685706 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| ||||| | || || |||| || ||| | || || || | Sbjct 3687497 ATGCAGATCTTTGTAAAAACGCTCACGGGGAAAATCATCACCCTGGAGGTAGAGGCTTCA 3687556 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||||| || || | || ||| | |||||||| | || |||||| Sbjct 3687557 GACACAATAGAAAACGTGAAAGCGAAGATTCAAGATAAAGAAGGAATGCCTCCAGACCAG 3687616 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| ||||| ||||||||||| | || | || |||| | Sbjct 3687617 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTACAAC 3687676 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||| ||| |||||||||| || ||| | ||| | || ||||| Sbjct 3687677 ATCCAGAAGGAGTCCACGCTTCACTTGGTGCTTCGACTTCGAGGAGG 3687723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418282700221760