Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq28 131 1e-25 seq136 129 5e-25 seq13 95.1 1e-14 seq413 86.0 6e-12 >seq28 Length=1782156 Score = 131 bits (144), Expect = 1e-25 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| ||||| ||||| ||||| | || |||||| | || Sbjct 1077125 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATCACTTTGGAAGTTGAAGCTTCA 1077066 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| |||||| | ||| || |||||||| | || || || ||| Sbjct 1077065 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 1077006 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC---TCTATGACTATGAGCGATTAT 31369 ||| | | || |||||||| ||||| | || ||| ||| ||| | ||||| Sbjct 1077005 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGGCGTAT-ACTTT--CTGATTAC 1076949 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| ||||| || ||||| || |||||| ||||||| || |||| Sbjct 1076948 AACATTCAAAAGGAATCTACACTTCACCTTGTACTTCGACTGAGAGGTGGTA 1076897 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| ||||| ||||| ||||| | || |||||| | || Sbjct 1077353 ATGCAAATTTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCA 1077294 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| |||||| | ||| || |||||||| | || ||||| ||| Sbjct 1077293 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAG 1077234 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| | || ||| || | ||||| ||| Sbjct 1077233 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAAC 1077174 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| |||||||| || ||||| || ||||||| |||| Sbjct 1077173 ATCCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGGGGTGGTA 1077125 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| ||||| |||||||||||| | || |||||| | ||| Sbjct 1078037 ATGCAAATCTTTGTTAAGACTCTCACAGGAAAAACGATCACCTTGGAAGTTGAAGCATCC 1077978 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | ||| || |||||||| | || || || ||| Sbjct 1077977 GACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 1077918 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTATA 31370 ||| | | || |||||||| ||||| | || || | ||| | | ||||||| Sbjct 1077917 CAGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCA--GATTATA 1077860 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || ||||| || |||||||| ||||| ||||||| || |||| Sbjct 1077859 ATATTCAGAAGGAATCAACACTTCATCTTGTACTCCGACTGAGAGGTGGTA 1077809 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| ||||| ||||| || || | || |||||| | || Sbjct 1076669 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATTACTTTGGAAGTTGAAGCATCG 1076610 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || ||| | ||| |||||| ||||| | ||||| || ||| Sbjct 1076609 GACACTATTGAGAATGTAAAAGCAAAAATTCAGGACAAAGAAGGAATTCCGCCAGATCAG 1076550 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || | ||||| || | ||||||||| Sbjct 1076549 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTTTCTGATTATAAC 1076490 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||||||| ||||||||| | || ||| |||| || || || Sbjct 1076489 ATTCAGAAAGAATCAACTCTTCATTTAGTTCTTCGACTTAGAGGTGG 1076443 >seq136 Length=558006 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || ||||| || || || || |||||||| ||||| || |||||| | |||||| || Sbjct 337662 CATGTATTGGCATTCTTTGCAGCCTCCGATGGAATTGTCAATGAGAATCTTGTCGAACGA 337721 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || ||||||||| | || ||||| | |||||||| || || ||||| ||||| Sbjct 337722 TTCAGTCAGGAAGTGCAAATCACAGAGGCACGTTGCTTTTATGGTTTCCAAGTTGCCATG 337781 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA 57850 ||||| |||||||||||||||||||| | | || ||||| || Sbjct 337782 GAAAATGTGCATTCAGAAATGTATTCTTTGTTAATTGATACTTA 337825 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||||| | | |||| ||||| ||||||||||| | ||||| ||| | | || || Sbjct 337393 GAACCATTACTTAAAGATAATCCACGTAGATTTGTTGTATTTCCTATTCAGTGGCCCGAT 337452 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| ||||| || |||||||| || ||||||||||| || Sbjct 337453 ATTTGGCAAATGTACAAGAAGGCCGAAGCTTCTTTTTGGACTGTTGAAGAAGTAGATCTT 337512 Query 57630 TCTAAGG 57636 ||||||| Sbjct 337513 TCTAAGG 337519 >seq13 Length=4112475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| ||||| ||||| ||||| || ||||| || ||||| |||||| | || || || Sbjct 3685473 ATCAAATATGCAGATTTTTGTAAAAACACTGACTGGGAAAACCATCACCCTGGAGGTAGA 3685532 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 | | || |||| | || | || ||| || || || || ||||| | || || Sbjct 3685533 AGCTTCAGACACCATAGAGAACGTGAAAGCGAAGATTCAAGATAAAGAAGGAATTCCTCC 3685592 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 |||||||||||| | || || |||||||| || |||||||| | || | || Sbjct 3685593 AGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGA 3685652 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| || || || || || ||||| |||| || |||| Sbjct 3685653 CTACAACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTGCGACT 3685697 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || ||||| || || ||||| ||||| |||||| | || || || | || Sbjct 3685708 ATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTCA 3685767 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| || || ||| || ||||| | || || |||||| Sbjct 3685768 GACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 3685827 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || |||||||| || ||||||| | || | || || ||| Sbjct 3685828 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAAC 3685887 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || ||||| || || ||||| |||| || |||| Sbjct 3685888 ATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACT 3685925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||| || || ||||| ||||| |||||| | || || ||| | || Sbjct 3687269 ATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAAGCTTCA 3687328 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || ||| || || ||||| | || || |||||| Sbjct 3687329 GACACAATAGAGAACGTGAAGGCGAAGATACAAGATAAAGAAGGAATTCCTCCAGACCAG 3687388 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || |||||||| || | |||||| | || | || || ||| Sbjct 3687389 CAGCGTTTGATCTTTGCTGGCAAGCAACTCGAAGACGGGAGAACGCTCTCAGACTACAAC 3687448 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||| |||| || |||| Sbjct 3687449 ATCCAAAAAGAGTCCACGCTTCACTTGGTGCTGCGACT 3687486 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||| || || ||||| ||||| |||||| | || || || | || Sbjct 3687953 ATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTCA 3688012 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| || || ||| || ||||| | || || |||||| Sbjct 3688013 GACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 3688072 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || |||||||| || ||||||| | || | || || ||| Sbjct 3688073 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAAC 3688132 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || ||||| || || ||||| |||| || |||| Sbjct 3688133 ATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACT 3688170 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||| || || ||||| ||||| |||||| | || || || | || Sbjct 3688181 ATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTCA 3688240 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| || || ||| || ||||| | || || |||||| Sbjct 3688241 GACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 3688300 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| | || || ||||||||||| |||||||| Sbjct 3688301 CAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGAC 3688336 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||| || || || || |||| |||||| | || || || | || Sbjct 3687497 ATGCAGATCTTTGTAAAAACGCTCACGGGGAAAATCATCACCCTGGAGGTAGAGGCTTCA 3687556 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| || || || || ||||| |||| || |||||| Sbjct 3687557 GACACAATAGAAAACGTGAAAGCGAAGATTCAAGATAAAGAAGGAATGCCTCCAGACCAG 3687616 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || |||||||| || |||||||| | || | || || ||| Sbjct 3687617 CAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTACAAC 3687676 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || || || || ||||| |||| ||| |||| Sbjct 3687677 ATCCAGAAGGAGTCCACGCTTCACTTGGTGCTTCGACT 3687714 >seq413 Length=693780 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||| || || || || ||||| || ||| | || || ||| | || Sbjct 292202 ATGCAGATATTCGTAAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTAGAAGCTTCA 292261 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || || || ||| | |||||||||||| | || || || || Sbjct 292262 GACACTATTGAAAATGTGAAGGCAAAGA-TCCAGGACAAGGAAGGAATTCCTCCAGATCA 292320 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| || || || |||||||| ||||| || ||||| Sbjct 292321 GCAACGACTTATTTTCGCTGGGAAACAATTAGAAGA 292356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445743119849760