Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq111 161 9e-35 seq136 114 1e-20 >seq111 Length=5712365 Score = 161 bits (178), Expect = 9e-35 Identities = 223/310 (72%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 37045 TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA 37104 |||||||||||||||| | | ||| |||||| ||||| | | ||| | || ||| Sbjct 1384 TGAATAGAACCATTATTTGCAATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCTT 1443 Query 37105 CTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTT 37164 ||| ||||| || | || ||||| || || ||||| |||||||| | ||||| Sbjct 1444 TCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCGC 1503 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 |||||||| || || || ||||||||||||| ||||||||||| | ||| || || | Sbjct 1504 CTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGCG 1563 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATT 37284 ||||| || || ||||| ||||| |||| | |||||| | ||| ||| | |||| Sbjct 1564 GTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAATT 1623 Query 37285 CTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCAT 37342 | | ||| | | || |||| ||||| || | |||||| | | || ||||||||||| Sbjct 1624 TTTTCTTTCAATACACTCCAGTCCCACAATTTAGTTGGGGTAACGTT--CCACATATCAT 1681 Query 37343 ATTGTAGAAT 37352 |||| || || Sbjct 1682 ATTGAAGGAT 1691 Score = 96.9 bits (106), Expect = 3e-15 Identities = 215/315 (68%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 38083 TTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141 || ||| ||||||| || || | || ||| || || ||||| || |||||||| |||| Sbjct 2817 TTACCTGTATTCTTT-TTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAA 2875 Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201 || || | | ||||||||||||||||| || || |||| || |||||| |||| || Sbjct 2876 GTATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATT 2935 Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261 |||||| | || | ||| || | || |||||||| || | |||| | ||| Sbjct 2936 ATTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACCAGCTATTGG 2995 Query 38262 AGTACCCTTAGCTCGTATATTACTTATCGACAA-TCCTATTCCACCTGCATGTTTTGAT- 38319 || || | ||||| ||| | | | || || || || ||||| || || ||| | Sbjct 2996 TGTTCCTCTTGCTCGAATA-CAATGAACGTTAAGCCCAATGCCACCAGC-TGATTTACTG 3053 Query 38320 ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGT 38379 || | || || |||||| || ||| | || || |||||||| || || | || | Sbjct 3054 ATAAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTC 3113 Query 38380 AGTATAAAACAACTA 38394 || | ||| |||||| Sbjct 3114 AGAAGAAAGCAACTA 3128 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916 ||| | ||||||| ||||| ||||| |||| ||| | || || | | | |||| Sbjct 1118 CCATTTTCCATCCATAAAAGTGCATTGAAGTCAACTTTTCCGCCGTTGGTTGAGCCATAT 1177 Query 36917 ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAA 36976 | | | |||||| |||||||||||| ||||| | || || ||||||| ||| | Sbjct 1178 GAACATTTAATGATTGCGATTGATCTATAAAAGCACCGCGATCTGCCGCCATTTTTAAGA 1237 Query 36977 TACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA 37033 ||| |||||| ||||| ||||| || ||||| || | | ||| | || ||||||| Sbjct 1238 TACTTTTTTGTGATATTTCCCAGACTGTTTTGTAAAGTATTTTCAGATCCTCTGGTA 1294 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 37695 AATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754 ||| || ||| ||| |||||||| ||||| ||| | | |||||| |||||||| Sbjct 2242 AATCGAAGCTAAATTGCATACAGCGACTTCGTCTGGACTGGAATATTGTACGATCTCTGT 2301 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 ||| | |||||| || |||||||||| | ||| ||||| ||||| || || Sbjct 2302 ACACAAATTACTACATTTAATTGTTCCTATATTTTGGTGATTTGATTTACGGTTGCAGTG 2361 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 ||||||||| || || || || || ||| ||| | ||| ||| | ||||| |||| Sbjct 2362 ATCTTTATACAGCATGTAAGGAGTCCCTGTTTCCACTTGTGCCATTAGAATAGCAGTCCA 2421 Query 37875 TAAACTTCTTGCTTTAA 37891 ||| ||| |||| || Sbjct 2422 TAAGTCTCTAGCTTGAA 2438 >seq136 Length=558006 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 11465 TCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACC 11524 || || || |||||||| || ||| |||| | ||||||||| ||||| | || || Sbjct 338505 TCCGCAACAAATTCTATGTATTGACACATAAGTTTACAATTCATGCCTATCATTTCGACA 338446 Query 11525 GGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTT 11584 || | || |||||||||| || | ||| || | ||| ||||| | || || ||||| Sbjct 338445 GGCAACGCGTCTGTCAAAAATTCTTGTTCGATTTCAACAGCATCCTTAATGATTGACGTG 338386 Query 11585 ATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAA 11644 | ||| ||||||| |||| || ||| ||||||||||||||||||| |||||| Sbjct 338385 ACTCGTTCGCAAGATGGTTTCTGTATTATGTGTCTAAACATTAAACACGCAAAGTCACAA 338326 Query 11645 TGTAAACC 11652 |||||||| Sbjct 338325 TGTAAACC 338318 Score = 105 bits (116), Expect = 6e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| ||||| ||||| ||| ||||||||||||||| | ||||||||| || | ||| || Sbjct 337826 ATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTGGAA 337767 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||| || || |||||||||| || || ||| | |||| ||| | | ||| Sbjct 337766 ACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAGATT 337707 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGT 12074 |||||| ||||| ||||| | |||||| ||||| | || ||| ||| |||| Sbjct 337706 CTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATGAGATATGAAGT 337651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468500331292320