Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq111 183 4e-41 seq136 105 9e-18 >seq111 Length=5712365 Score = 183 bits (202), Expect = 4e-41 Identities = 190/249 (76%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 |||||| || ||| || ||| |||||| |||||| || || || | ||| | | ||| Sbjct 1383 CTGAATAGAACCATTATTTGCAATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCT 1442 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 || |||||| |||| | | ||| ||||| || ||||||||||||||||||| ||||| Sbjct 1443 TTCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCG 1502 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || || || || ||||| ||||| ||||| ||||||||||||||||| ||||| || || Sbjct 1503 CCTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGC 1562 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||||||||| | || ||| |||||||| |||| | || || Sbjct 1563 GGTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAAT 1622 Query 65327 TTTATCTTT 65335 ||| ||||| Sbjct 1623 TTTTTCTTT 1631 Score = 150 bits (166), Expect = 2e-31 Identities = 223/314 (71%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || |||||||||||||| ||||| | || | | |||||| |||||| || || ||| Sbjct 2817 TTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAAG 2876 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 |||||||| | |||| || | ||| ||||| || ||||| | ||||||||| || ||| Sbjct 2877 TATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATTA 2936 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 ||||| || || | ||||||||| | ||||| || |||| || || || ||| | Sbjct 2937 TTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACC--AGCTATTG 2994 Query 66306 --CTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 66363 |||| ||||| |||||| | || || || || || || || |||| || Sbjct 2995 GTGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGA 3054 Query 66364 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 66423 | | || || | |||||| || ||||| ||||| ||||||||||| || |||| | | Sbjct 3055 TAAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCA 3114 Query 66424 GTAGAAAACAGCTA 66437 | ||||| || ||| Sbjct 3115 GAAGAAAGCAACTA 3128 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 65721 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780 || ||||| || | |||| || || | ||| || || || || || | | | | | Sbjct 2225 ACGAACATATTGACGGCAATCGAAGCTAAATTGCATACAGCGACTTCGTCTGGACTGGAA 2284 Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 ||||||| ||||| || || | ||||||||| || || ||||||| |||||| ||||| Sbjct 2285 TATTGTACGATCTCTGTACACAAATTACTACATTTAATTGTTCCTATATTTTGGTGATTT 2344 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 || ||| || ||| ||||| || ||| | ||||| || ||||| | || | Sbjct 2345 GATTTACGGTTGCAGTGATCTTTATACAGCATGTAAGGAGTCCCTGTTTCCACTTGTGCC 2404 Query 65901 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT 65960 || ||| || |||| | | ||| ||| | ||| ||| ||||||||||| || Sbjct 2405 ATTAGAATAGCAGTCCATAAGTCTCTAGCTTGAATTTGTCGTTTATATCTCTTTTCATTT 2464 Query 65961 TCGTAT 65966 || ||| Sbjct 2465 TCATAT 2470 >seq136 Length=558006 Score = 105 bits (116), Expect = 9e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 36424 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 36483 || ||| |||||||| || | | ||||||||| ||||| | ||||| ||||| | ||| Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 36484 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAA 36543 || || || || || | ||||| || || || ||||| || |||||||| | | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAG 337710 Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 36591 ||| ||||| || ||||| || ||||||||| || ||||||||||| Sbjct 337709 ATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATG 337662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658138426925520