Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 seq28 100 3e-16 seq413 89.7 5e-13 >seq13 Length=4112475 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | |||| || ||||||| ||| ||||||||||| ||||| || || Sbjct 3687495 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTGAG 3687436 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || ||| ||||||||| || || |||||| |||||| ||| ||||| || ||||| Sbjct 3687435 AGCGTTCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687376 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || || || || | | || | |||||| | | || ||| Sbjct 3687375 ATTCCTTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTACC 3687316 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||||||| || || ||||| Sbjct 3687315 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687269 >seq28 Length=1782156 Score = 100 bits (110), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| |||| || || ||||| |||||||||||||| | ||||| | ||||| Sbjct 1076460 AACTAAATGAAGAGTTGATTCTTTCTGAATGTTATAATCAGAAAGTGTGCGCCCATCTTC 1076519 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || || || |||||| |||||| | |||||||| || || || ||||||||||| | Sbjct 1076520 AAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGCGGAATTCCTTCTTTGTC-CT 1076578 Query 139675 GATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||||| ||||| | || | ||||| | | || || || | || | || | Sbjct 1076579 GAATTTTTGCTTTTACATTCTCAATAGTGTCCGATGCTTCAACTTCCAAAGTAATGGTTT 1076638 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || | || || ||||| ||||||||| Sbjct 1076639 TTCCTGTAAGAGTCTTGACGAAGATTTGCATA 1076670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || || || || |||||||| ||||| | ||||| | ||||| || || Sbjct 1078062 GTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCTTCAAGTTG 1078121 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| |||| | | |||||| || || || || ||||| || || ||| ||| Sbjct 1078122 TTTACCAGCGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATC-TTGAATTT 1078180 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| ||| | | ||| | || || | | ||| ||||||| ||| | || || || | Sbjct 1078181 TTGCTTTGACATTTTCAATGGTATCTGATGCCTCAACCTCAAGGGTTATTGTTTTACCAG 1078240 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 |||| || || || || || ||||| Sbjct 1078241 TCAATGTCTTAACAAAGATCTGCAT 1078265 >seq413 Length=693780 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 ||||||| || || |||||| | |||| || | ||||| | ||||| ||||| | Sbjct 292391 CTTTTTGGATATTGTAATCGGAGAGGGTGCGTCCA-TCTTCTAATTGTTTCCCAGCGAAA 292333 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 || || ||||||||||| ||||| || ||||| ||||| ||| ||| || | | | Sbjct 292332 ATAAGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTT 292273 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | ||||| | | || ||||||| ||| | || || || || | ||||||||| Sbjct 292272 TCAATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACG 292213 Query 139754 AATATTTGCAT 139764 ||||| ||||| Sbjct 292212 AATATCTGCAT 292202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496038093057600