Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq111 192 8e-44 seq136 109 8e-19 >seq111 Length=5712365 Score = 192 bits (212), Expect = 8e-44 Identities = 230/310 (74%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 |||||| || ||| || ||| |||||| |||||| || || || | ||| | | ||| Sbjct 1383 CTGAATAGAACCATTATTTGCAATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCT 1442 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 || |||||| |||| | | ||| ||||| || ||||||||||||||||||| ||||| Sbjct 1443 TTCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCG 1502 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || || || || ||||| ||||||||||| || || ||||||||||| ||||| || || Sbjct 1503 CCTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGC 1562 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || || |||||||||||||| | || ||| |||||||| |||| | | || Sbjct 1563 GGTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAAT 1622 Query 79206 TTTATCTTT-TAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 ||| ||||| | | | | ||| ||||| | | || ||| ||| ||||| | ||||| Sbjct 1623 TTTTTCTTTCAATACACT-CCAGTCCCACAATTTAGTTGGGGTAACGTTCCACATATCAT 1681 Query 79265 ATTGTAGAAT 79274 |||| || || Sbjct 1682 ATTGAAGGAT 1691 Score = 156 bits (172), Expect = 6e-33 Identities = 224/314 (71%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || |||||||||||||| ||||| | || | | |||||| | |||||| || || ||| Sbjct 2817 TTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAAG 2876 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 |||||||| | |||| |||| ||| ||||| || ||||| | ||||||||| || ||| Sbjct 2877 TATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATTA 2936 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 ||||| || || | ||||||||| | ||||| || |||| || || || ||| | Sbjct 2937 TTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACC--AGCTATTG 2994 Query 80185 --CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 80242 |||| || || |||||| | || || || || || || || |||| || Sbjct 2995 GTGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGA 3054 Query 80243 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 | | || || | |||||| || ||||| ||||| ||||| ||||| ||| |||| | | Sbjct 3055 TAAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCA 3114 Query 80303 GTAGAAAACAGCTA 80316 | ||||| || ||| Sbjct 3115 GAAGAAAGCAACTA 3128 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 80678 CACTAAATAGtttt-tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAA 80736 ||||||| |||||| |||||||||||||| | ||| || || || ||||| || || || Sbjct 3677 CACTAAA-AGTTTTCTTTGTTTCCTTGTGCAAATTAGAAACTGCAATTCTTGCTGCCAAT 3735 Query 80737 ATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 80796 || || ||||| ||||||| ||||| ||||||||| |||||||||| ||| | || Sbjct 3736 ATTGCGTAATCAGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCGGCTGCAAGATTATCT 3795 Query 80797 AATTCTACCGT 80807 || || || || Sbjct 3796 AACTCAACTGT 3806 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTC---GGCTAATTCACAACTCGCCTCTAATGCTCC 79355 |||||||||||| | | ||||||| ||| | |||||||| |||||||| || | Sbjct 1852 GTATGTTTCATATGTAC---CCTTTTCCATGGCAAGCTCACAACTGGCCTCTAAGGCACT 1908 Query 79356 GTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG 79415 ||||| || ||||| || |||| ||| |||| |||||| ||| || |||||||| Sbjct 1909 ATAATACATTGTTTCAAATATCTGGACATTAAGATTTTGTGCCTCTTCACTTTCAAATGG 1968 Query 79416 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 ||| | | || ||| || || || | |||||| | |||||||| Sbjct 1969 ATACCGCATTAAAAGAAATGCATCAGCAAGTCCTTGTATTCCAATACC 2016 >seq136 Length=558006 Score = 109 bits (120), Expect = 8e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 50226 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 50285 || ||||||||| || || | | ||||||||| ||||| | ||||| ||||| | || Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 50286 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAA 50345 || || || || || | ||||| || || |||||||| || |||||||| | | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAG 337710 Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 ||| ||||| || ||||| || ||||||||| || ||||||||||| ||| || || Sbjct 337709 ATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATGAGATATGAAGTG 337650 Query 50406 TTTTTCGTTGGGTGTTAG 50423 || || ||| ||| || Sbjct 337649 CTTCTCACTGGATGTCAG 337632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718231288411920