Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq136 87.8 2e-12 >seq136 Length=558006 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||| || |||||||| | || ||||||||| || || | |||||||| || | || Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCA 14259 |||||||||||||| | || || | ||| |||||| || | |||| |||| | | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACT-GAATCGTTCGACAA 337711 Query 14260 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATA 14304 ||| ||||| || || ||||| |||||||| |||||||||| Sbjct 337710 GATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATA 337666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 13667 CATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATA 13726 || ||| || || | |||||| ||||| | |||| || || |||| ||| || || || Sbjct 338545 CACAAATACCTTCTGACAACCCAGTTCAACGAGTAGTCGGTCCGCAACAAATTCTATGTA 338486 Query 13727 TTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAA 13786 |||| |||| | | ||||||||| ||||| | || ||||| | | || ||||| Sbjct 338485 TTGACACATAAGTTTACAATTCATGCCTATCATTTCGACAGGCAACGCGTCTGTCAAAAA 338426 Query 13787 TTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGG 13846 ||||| ||| || ||||| || || ||| |||| | | ||| || | | || | Sbjct 338425 TTCTTGTTCGATTTCAACAGCATCCTT---AATGATTGACGTGA-CTCGTTCGCAAGATG 338370 Query 13847 ATATTT----TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 | | | || ||| |||| |||||||||||||| |||||||| | |||| Sbjct 338369 GTTTCTGTATTATGTGTCTAAACATTAAACACGCAAAGTCACAATGTAAACCCT 338316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 14359 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14418 ||||||||||||||||||| ||||| ||||||||| ||| | || || || |||||| Sbjct 337519 CCTTAGAAAGATCTACTTCTTCAACAGTCCAAAAAGAAGCTTCGGCCTTCTTGTACATTT 337460 Query 14419 CCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT-CGAAGATGTTTCTTTAAGA 14477 ||| || || | |||||||| || |||||||| || ||| | |||||||| Sbjct 337459 GCCAAATATCGGGCCACTGAATAGGAAATACAACAAATCTACGTGGAT-TATCTTTAAGT 337401 Query 14478 ATTGGTTCCATTT 14490 | |||||||| || Sbjct 337400 AATGGTTCCAATT 337388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479702946205200