Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq28 96.9 3e-15 >seq28 Length=1782156 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||||| || | ||||||| |||| || | |||||| || || ||| Sbjct 1077163 TCCTTCTGGATGTTGTAATCAGAAAGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAA 1077222 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||| ||||||| || | ||||| || || || ||||||| | Sbjct 1077223 ATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTT 1077282 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||| || || || | || || |||||||| || ||||| || || Sbjct 1077283 TCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTGACG 1077342 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 1077343 AAAATTTGCAT 1077353 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | |||||||| || | | |||| |||| || | |||||| || || ||| Sbjct 1076935 TCCTTTTGAATGTTGTAATCAGAAAGTATACGCCCGTCCTCGAGTTGTTTACCAGCGAAA 1076994 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||| ||||| | || | ||||| || || || ||||||| | Sbjct 1076995 ATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTT 1077054 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||| || || || | || ||||||||||| || ||||| || || Sbjct 1077055 TCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATAGTTTTTCCTGTAAGAGTCTTAACG 1077114 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 1077115 AAAATTTGCAT 1077125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381350180898324