Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq111 170 3e-37 seq136 91.5 2e-13 >seq111 Length=5712365 Score = 170 bits (188), Expect = 3e-37 Identities = 187/249 (75%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||| || ||| || |||||||||| ||| || || || || | ||| | | ||| Sbjct 1383 CTGAATAGAACCATTATTTGCAATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCT 1442 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || |||||| |||| | | ||||||||| || ||||||||||||||||||| ||||| Sbjct 1443 TTCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCG 1502 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 | || || || ||||| ||||| ||||| || |||||||||||||| ||||| || || Sbjct 1503 CCTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGC 1562 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||||||||| | || | | |||||||| || ||| | || Sbjct 1563 GGTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAAT 1622 Query 71289 TTTATCTTT 71297 ||| ||||| Sbjct 1623 TTTTTCTTT 1631 Score = 150 bits (166), Expect = 2e-31 Identities = 223/314 (71%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || |||||||||||||| ||||| | || | | |||||| | |||||| || || ||| Sbjct 2817 TTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAAG 2876 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 |||||||| | |||| || | ||| ||||| || ||||| | ||||||||| || ||| Sbjct 2877 TATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATTA 2936 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 ||||| || || | ||||||||| | ||||| || ||||| || || || ||| | Sbjct 2937 TTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACC--AGCTATTG 2994 Query 72268 --CTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 |||| || || |||||| || || || || || || || |||| || Sbjct 2995 GTGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGA 3054 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 | | || || | |||||| || ||||| ||||| ||||||||||| || |||| | | Sbjct 3055 TAAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCA 3114 Query 72386 GTAGAAAACAGCTA 72399 | ||||| || ||| Sbjct 3115 GAAGAAAGCAACTA 3128 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 72761 CACTAAATAGtttt-tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 72819 ||||||| |||||| |||||||||||||| | ||| || || || ||||| || || | Sbjct 3677 CACTAAA-AGTTTTCTTTGTTTCCTTGTGCAAATTAGAAACTGCAATTCTTGCTGCCAAT 3735 Query 72820 ATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCC 72879 || || ||||| ||||||| ||||| ||||||||| |||| ||||| ||| | || Sbjct 3736 ATTGCGTAATCAGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCGGCTGCAAGATTATCT 3795 Query 72880 AATTCTACCGT 72890 || || || || Sbjct 3796 AACTCAACTGT 3806 >seq136 Length=558006 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 42331 AACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390 || ||| ||||| || || | | ||||||||||||||| | ||||| ||||| | || Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 42391 AAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAA 42450 || || || || || | ||||| || | || ||||| || |||||||| | | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAG 337710 Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 42498 ||| || || || ||||| || ||||||||| || ||||||||||| Sbjct 337709 ATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATG 337662 Score = 89.7 bits (98), Expect = 7e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 ||||| | |||||||||||| || |||||||| || ||||| ||||| || ||||| | | Sbjct 337517 TTAGAAAGATCTACTTCTTCAACAGTCCAAAAAGAAGCTTCGGCCTTCTTGTACATTTGC 337458 Query 42611 CAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 || ||||| | | ||||| || || | |||||||||| |||||| Sbjct 337457 CAAATATCGGGCCACTGAATAGGAAATACAACAAATCTACGTGGATT 337411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671104149755280