Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq28 123 3e-23 seq13 98.7 1e-15 seq413 95.1 1e-14 seq111 93.3 4e-14 >seq28 Length=1782156 Score = 123 bits (136), Expect = 3e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||||| || |||||||| || ||||| ||||| | ||||| | ||||| Sbjct 1076460 AACTAAATGAAGAGTTGATTCTTTCTGAATGTTATAATCAGAAAGTGTGCGCCCATCTTC 1076519 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || |||||| |||||| | |||||||| || || || ||||||||||| Sbjct 1076520 AAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGCGGAATTCCTTCTTTGTCCTG 1076579 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||||| ||||| | || | ||||||| | ||| ||||| | ||| | || || Sbjct 1076580 AATTTTTGCTTTTACATTCTCAATAGTGTCCGATGCTTCAACTTCCAAAGTAATGGTTTT 1076639 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || || ||||| ||||||||| Sbjct 1076640 TCCTGTAAGAGTCTTGACGAAGATTTGCATA 1076670 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||| ||||| || || ||||||||||| | ||||| | || || |||||| Sbjct 1076695 TGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCCTCAAGTTGT 1076754 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| |||||| | |||||||| || || || ||||| || || |||||| Sbjct 1076755 TTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTG 1076814 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | ||| | ||||| | || ||| ||||| | ||| | || || || || Sbjct 1076815 GCTTTGACATTTTCAATAGTGTCAGAGGCTTCGACTTCCAAAGTGATGGTTTTTCCTGTA 1076874 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| ||||||||| Sbjct 1076875 AGAGTCTTGACGAAGATTTGCATA 1076898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||||||| ||||| ||||||||||| | | | | | ||| ||||||||| Sbjct 1076923 TGAAGTGTAGATTCCTTTTGAATGTTGTAATCAGAAAGTATACGCCCGTCCTCGAGTTGT 1076982 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| | |||| | |||||||| || || || ||||| || || |||||| Sbjct 1076983 TTACCAGCGAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTA 1077042 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | ||| | || || | | ||| ||||| | ||| | || || || || Sbjct 1077043 GCTTTGACATTTTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATAGTTTTTCCTGTA 1077102 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| ||||||||| Sbjct 1077103 AGAGTCTTAACGAAAATTTGCATA 1077126 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| |||||||| || || ||||||||||| | ||| | ||| ||||||||| Sbjct 1077151 TGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGTGTACGTCCGTCCTCGAGTTGT 1077210 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| | |||| | ||||||||||| || || ||||| || || |||||| Sbjct 1077211 TTACCAGCGAAAATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTTA 1077270 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | ||| | || || | | ||| ||||| | ||| | || || || || Sbjct 1077271 GCTTTGACATTTTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTA 1077330 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| ||||||||| Sbjct 1077331 AGAGTCTTGACGAAAATTTGCATA 1077354 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| |||||||| || || ||||||||||| | ||| | ||| ||||||||| Sbjct 1077379 TGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGTGTACGTCCGTCCTCGAGTTGT 1077438 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| | |||| | ||||||||||| || || ||||| || || |||||| Sbjct 1077439 TTACCAGCGAAAATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTATCTTGAATTTTA 1077498 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | ||| | || || | | ||| ||||| | ||| | || || || || Sbjct 1077499 GCTTTGACATTTTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTA 1077558 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| ||||||||| Sbjct 1077559 AGAGTCTTAACGAAGATTTGCATA 1077582 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||| ||||| || || ||||||||||| | ||||| | ||||| |||||| Sbjct 1078063 TGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCTTCAAGTTGT 1078122 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 |||||||| |||| | | |||||| || || || || ||||| || || ||||||| Sbjct 1078123 TTACCAGCGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTTT 1078182 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | ||| | || || | | || || |||| || | || || || ||| Sbjct 1078183 GCTTTGACATTTTCAATGGTATCTGATGCCTCAACCTCAAGGGTTATTGTTTTACCAGTC 1078242 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 ||||| || || || || ||||| Sbjct 1078243 AATGTCTTAACAAAGATCTGCAT 1078265 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 |||||||| || || || || ||||| | ||||| || | || || ||||||||||| Sbjct 1077613 GTAGATTCCTTCTGAATATTATAATCTGAAAGTGTGCGTCCA-TCCTCAAGTTGTTTACC 1077671 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| |||||| | |||||| || || || || ||||| || || ||||||| || Sbjct 1077672 AGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTTTGCCTT 1077731 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 || | || | ||||| | || ||| ||||| | ||| | || || || || | || Sbjct 1077732 TACATTCTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTGAGAGT 1077791 Query 143167 TTTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 1077792 CTTAACAAAGATTTGCATA 1077810 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| ||| ||||| || || || || ||||| | ||||| | || || ||||| Sbjct 1077834 ATGAAGTGTTGATTCCTTCTGAATATTATAATCTGAAAGTGTGCGCCCATCCTCAAGTTG 1077893 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||||||||| |||||| | |||||||| || || || ||||| || || |||||| Sbjct 1077894 TTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTT 1077953 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 | |||| | || | ||||| | | ||| ||||| | || | ||| || || || Sbjct 1077954 TGCCTTTACATTCTCAATAGTGTCGGATGCTTCAACTTCCAAGGTGATCGTTTTTCCTGT 1078013 Query 143161 CAATGTTTTTACGAATATTTGCATA 143185 | || || || || ||||||||| Sbjct 1078014 GAGAGTCTTAACAAAGATTTGCATA 1078038 >seq13 Length=4112475 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | |||| || || |||| || || |||||||| |||||||| || Sbjct 3687495 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTGAG 3687436 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| |||||||||||| || |||||| |||||| ||| ||||| || ||||| Sbjct 3687435 AGCGTTCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687376 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || || || || | | || | ||||| | | |||||| Sbjct 3687375 ATTCCTTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTACC 3687316 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | |||||||| || || ||||| Sbjct 3687315 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687269 >seq413 Length=693780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 142995 CTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 ||||||| || ||||||||| | |||| || | ||||| | |||||| ||||| | Sbjct 292391 CTTTTTGGATATTGTAATCGGAGAGGGTGCGTCCA-TCTTCTAATTGTTTCCCAGCGAAA 292333 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 || || ||||||||||| ||||| || ||||| ||||| || ||| || | | | Sbjct 292332 ATAAGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTT 292273 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | ||||| | | |||||| |||| || | || || || || | ||||||||| Sbjct 292272 TCAATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACG 292213 Query 143174 AATATTTGCAT 143184 ||||| ||||| Sbjct 292212 AATATCTGCAT 292202 >seq111 Length=5712365 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 157047 TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTA 157106 |||||||||||||||| |||| ||| ||||| || |||||| || | ||||||||| Sbjct 2232 TATTGACGGCAATCGAAGCTAAATTGCATACAGCGACTTCGTCTGGACTGGAATATTGTA 2291 Query 157107 CTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGC 157166 | || || | ||||||||| || ||||| || ||| ||| ||||| ||| | Sbjct 2292 CGATCTCTGTACACAAATTACTACATTTAATTGTTCCTATATTTTGGTGATTTGATTTAC 2351 Query 157167 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 157215 ||||||| || || || | |||||| || || || ||||| |||| Sbjct 2352 GGTTGCAGTGATCTTTATACAGCATGTAAGGAGTCCCTGTTTCCACTTG 2400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506987921172960