Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq28 104 2e-17 seq13 86.0 4e-12 >seq28 Length=1782156 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGA-CGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 || || ||||| || ||||| | || || ||| |||| || | |||||| || || || Sbjct 1078075 TCCTTCTGAATGTTGTAATC-TGAAAGTGTGCGCCCATCTTCAAGTTGTTTACCAGCGAA 1078133 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 || || | ||||||||| | || | ||||| |||||| ||||||| |||||| | Sbjct 1078134 GATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTTTGCTTTGACATT 1078193 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||||| | ||| || || | || ||||||||||| || || ||||| || Sbjct 1078194 TTCAATGGTATCTGATGCCTCAACCTCAAGGGTTATTGTTTTACCAGTCAATGTCTTAAC 1078253 Query 44110 AAATATTTGCATGT 44123 ||| || ||||||| Sbjct 1078254 AAAGATCTGCATGT 1078267 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 || || |||||||||||||| | || || || |||| || | |||||| || || || Sbjct 1077619 TCCTTCTGAATATTATAATC-TGAAAGTGTGCGTCCATCCTCAAGTTGTTTACCAGCGAA 1077677 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||| | ||||||||| | || | ||||| |||||| ||||||| || || | Sbjct 1077678 GATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTTTGCCTTTACATT 1077737 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||| || | | || || || | || || ||||| || || | |||||| || Sbjct 1077738 CTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAAC 1077797 Query 44110 AAATATTTGCAT 44121 ||| |||||||| Sbjct 1077798 AAAGATTTGCAT 1077809 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| || | || | ||| || || || || |||||||||||||| | Sbjct 1077810 ACCACCTCTCAGTCGGAGTACAAGATGAAGTGTTGATTCCTTCTGAATATTATAATC-TG 1077868 Query 43954 TAATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || ||| |||| || | |||||| || || || ||||| | ||||| || | | Sbjct 1077869 AAAGTGTGCGCCCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTG 1077928 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| ||||||| || || | ||| ||| || | | || | Sbjct 1077929 GGATTCCTTCCTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCGGATGCTTCAA 1077988 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || ||||| || || | |||||| ||||| |||||||| Sbjct 1077989 CTTCCAAGGTGATCGTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1078037 >seq13 Length=4112475 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | || | |||||| || |||||| |||||| || || || || || Sbjct 3687267 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3687208 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| |||| ||| || || ||||| ||||| || |||||||| |||| Sbjct 3687207 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687148 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||| ||| || || | | | || |||| | ||| || Sbjct 3687147 ATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACC 3687088 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | || || ||||| |||||||| Sbjct 3687087 TCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687041 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||| | || | |||||| || |||||| |||||| || || || || || Sbjct 3687951 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3687892 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| |||| ||| || || ||||| ||||| || |||||||| |||| Sbjct 3687891 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687832 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||| ||| || || | | | || |||| | ||| || Sbjct 3687831 ATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACC 3687772 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | || || ||||| |||||||| Sbjct 3687771 TCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354759534946344