Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq67 214 1e-50 >seq67 Length=3110482 Score = 214 bits (236), Expect = 1e-50 Identities = 421/615 (68%), Gaps = 11/615 (2%) Strand=Plus/Minus Query 3530 GCtttttttATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCATGCAACGAATTTC 3589 || ||||| | || ||| ||||| |||||||||||||| ||| ||| || || Sbjct 891366 GCATTTTTCTTAAATCGAGCAGCTGTTAAAATGGCAAACATCGATAGAGCATGTAACTTT 891307 Query 3590 GTATTTACACGATTGAATGATGGATCAAAT---GAATTGATATATTTTGCTGACGTATGC 3646 | ||||| | || | | | ||| || ||| | ||||||||||| |||||| Sbjct 891306 ATGTTTACCAAACCAAACGGTTTACAGAATAACGAGTTGCTGTATTTTGCTGATGTATGC 891247 Query 3647 GCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGGAATATCAAAGGT 3706 ||||| ||||||||||| || ||||| | ||||||| || || ||| ||| || Sbjct 891246 GCTGGACCAGGTGGTTTTAGCGAATACGTCCTATGGAGGAAAAAGTGGCGCGCCAAGGGG 891187 Query 3707 TATGGTATGACGTTACGCGaaa--aaaaTGATTTTCAACTGAACAGATTTTACGATAACT 3764 | |||| | || || | ||| ||||||||||| | | || ||||||| || | Sbjct 891186 TTTGGTTTTACTTT--GAAAAACGAAAATGATTTTAAGTTAGACGATTTTTACG-TAGGT 891130 Query 3765 TTTCG-GAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAATATCTACAATTCA 3823 | ||||| || || || |||||||| || || ||||| || | | |||| Sbjct 891129 CCCTGTGAAACATTTCATCCATATTATGGACCAAAGGACAATGGTGATGTTTTTGATTCT 891070 Query 3824 CAAAATCAGAAAGGTTTTTGTGAAATGATTATGAAAGATACCGAAGGAAAAGGTGTACAT 3883 | || || |||| ||| | || | || |||| | ||||| | | || || ||||| Sbjct 891069 GATAACCAAAAAGCTTTCAGGGACCTCATAATGACACATACCAACCGTAAGGGCGTACAC 891010 Query 3884 TTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTA 3943 |||||||||||||| || || ||||| || | |||||||| ||| |||| || || || Sbjct 891009 TTTATGATGGCTGATGGAGGTTTCTCAGTGAATGGTCAAGATAATTTGCAGGAGATTTTG 890950 Query 3944 TCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGT 4003 | |||| | |||| | || ||||| ||| | ||| ||||||| ||||| || Sbjct 890949 TTGAAACGGTTGTACCTCTGCCAATGCTTAGTGGCACTGATGATTGTACGAGAGAAGGGC 890890 Query 4004 CATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTG 4063 |||| ||| | ||| | || || | |||||||| |||||||| || ||||| || || Sbjct 890889 CATTTTGTCACAAAACTATTTGACCTTTTTACACCCTTTAGTGCAGGATTAGTTTACTTA 890830 Query 4064 ATGTATAGATCTTTTAATCGTA-TTTGTATTTTCAAACCACATTCATCGCGACCGGCCAA 4122 |||||| | | || | || | || | ||||| |||||| | || || | || || || Sbjct 890829 ATGTATCGTTGCTTCGA-CGAAGTTAGCATTTTTAAACCAAACTCCTCCAGGCCAGCAAA 890771 Query 4123 TTCTGAAAGATATTT 4137 ||| ||| ||||||| Sbjct 890770 TTCGGAACGATATTT 890756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276539518063534