Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq237 179 6e-41 seq53 150 3e-32 seq832 145 1e-30 >seq237 Length=2179369 Score = 179 bits (198), Expect = 6e-41 Identities = 188/247 (76%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || ||||| ||||| || ||||||||||| ||||||||||| Sbjct 752955 TCTACGTGATAACATCCAGGGCATCACAAAGCCTGCCATCCGTCGTCTAGCTCGTCGTGG 752896 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||| ||| | ||||| ||| |||||||||| | ||||| ||| ||||| | || Sbjct 752895 CGGTGTCAAACGTATTTCTGGTTTGATCTATGAAGAAACTCGTGGTGTACTGAAGGTTTT 752836 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | || |||| |||||| | || || |||||||| ||| | |||||||| Sbjct 752835 CCTGGAAAATGTGATCCGTGATGCAGTAACGTACACTGAGCACGCCAAAAGGAAGACTGT 752776 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || || |||| |||||||| | | | || |||||||| Sbjct 752775 GACCGCCATGGACGTTGTGTACGCCCTGAAGCGTCAAGGAAGAACCCTCTACGGTTTTGG 752716 Query 16693 AAGTTAA 16699 | ||||| Sbjct 752715 AGGTTAA 752709 Score = 174 bits (192), Expect = 2e-39 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| ||||| || ||||| |||||||||||||| ||||||||| Sbjct 1059166 CTTCGTGATAACATCCAAGGTATCACGAAACCAGCGATCCGTCGTCTGGCCCGTCGTGGT 1059225 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| || || | || || || | |||| ||| |||| |||| Sbjct 1059226 GGTGTGAAGCGTATCTCAGGTCTGATTTACGAGGAAACCCGTGGTGTACTGAAAGTCTTT 1059285 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||| || | |||||| | || ||||||||||| ||||| ||||| || Sbjct 1059286 CTGGAAAACGTCATTCGTGATGCGGTAACGTACACCGAGCACGCCAAACGGAAGACCGTG 1059345 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| |||||||||| | || | ||||| || | |||| ||||||||| Sbjct 1059346 ACTGCTATGGATGTCGTCTATGCGCTCAAGAGACAAGGACGCACCCTTTACGGTTTTGGA 1059405 Query 16694 AGTTAA 16699 ||||| Sbjct 1059406 GGTTAA 1059411 Score = 111 bits (122), Expect = 2e-20 Identities = 172/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||| |||||||| ||||||||||| ||||| || | |||| | | || Sbjct 1048844 CTGCGTGATAATATCCAAGGTATCACCAAGCCGGCTATTCGCAGATTGGCGAGGAGAGGC 1048903 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || ||| ||| |||| ||||| | |||| || ||||| | ||| Sbjct 1048904 GGTGTGAAGAGAATCAGTGGCTTGATCTACGAAGAAACACGTGGAGTATTGAAAGTTTTC 1048963 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | |||||| | ||||||| || || || || ||||| || | || || || Sbjct 1048964 TTGGAAAACGTTATTCGTGATGCTGTCACGTACACTGAACACGCGAAGAGGAAAACCGTG 1049023 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | || || || |||||||| |||||| | | | |||||||| ||| Sbjct 1049024 ACGGCTATGGACGTGGTATACGCGTTGAAACGCCAAGGCAGAACCCTGTATGGTTTCGGA 1049083 Query 16694 AGTTAA 16699 ||||| Sbjct 1049084 GGTTAA 1049089 >seq53 Length=195943 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| || || |||||||| || |||||||||||| |||| | |||||||| Sbjct 170964 CGTGATAACATTCAGGGTATCACCAAACCGGCTATCCGTCGTTTGGCGAGACGTGGTGGT 171023 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||| | | ||||| ||| | |||||||| | ||| | || |||| | || || Sbjct 171024 GTCAAGAGAATTTCTGGTTTGATTTATGAAGAAACTCGAGGAGTACTGAAAGTTTTTCTT 171083 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||||||| | || || ||||| || || | |||||||| || Sbjct 171084 GAGAACGTGATCCGTGATGCTGTTACGTACACGGAGCATGCAAAGAGGAAGACTGTGACT 171143 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | ||||| | ||||| |||||||| |||||||| | | | |||| || ||||| || Sbjct 171144 GCAATGGACGTGGTCTACGCATTGAAGCGTCAAGGAAGAACGCTTTACGGATTTGGTGGT 171203 Query 16697 TAA 16699 ||| Sbjct 171204 TAA 171206 >seq832 Length=5109 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || |||||||||||||| ||||| ||||| ||||| Sbjct 1882 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAAGGTATCACGAAGCCTGCTAT 1941 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||| ||||| || || || ||||| | |||||| | | || || || | Sbjct 1942 CCGCCGTTTGGCCCGTCGAGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAAC 2001 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | ||| ||| || | |||||| | ||| || || Sbjct 2002 GCGTGGCGTTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTGACCTACACGGA 2061 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| || || |||||||| | || || || |||| | ||||| Sbjct 2062 ACACGCCAAGAGGAAGACAGTTACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGG 2121 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 2122 CCGCACCCTCTACGGATTTGGCGGTTAA 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071380025354