Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq251 118 2e-22 seq52 93.3 8e-15 seq35 93.3 8e-15 seq28 80.6 5e-11 >seq251 Length=214178 Score = 118 bits (130), Expect = 2e-22 Identities = 174/244 (71%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 7961 CCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAG 8020 ||| | ||||| ||||||||| | ||||||| ||||| || || || ||| || | Sbjct 60268 CCATTCGAACTACACATACCAAGATATCAGTTTTGCGGACCTGGCACGCGATTA--CAGG 60325 Query 8021 A--GATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACG 8078 | | |||| ||||| ||| ||| | | |||||| | || |||||||| ||||||| Sbjct 60326 AACGGCTAGCGCGAGGGGATCGTGGTGTGATGCCTTTGAATGCAGCGTGTAAAGAACACG 60385 Query 8079 ATATAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTCGTCACGAGGCTGATAAAATTC 8138 ||||||| || || || ||| || || | ||| |||||||| || ||||||||| Sbjct 60386 ATATAGCATATTCTCAA---CGTAAAGATCTTCAAGGACGTCACGACGCCGATAAAATTT 60442 Query 8139 TTGCTGAGAAAGCGTGGCAACGATTTCAAGCGAGAGACGCTGCTATTGGTGAAAAAGCTG 8198 | ||||| | | || | ||||| | ||| |||||| | ||||||||||||| | Sbjct 60443 TGGCTGAAATATCGGGACAACGTGTAACAGCCGCAGACGCATCGTTTGGTGAAAAAGCAG 60502 Query 8199 CTGC 8202 |||| Sbjct 60503 CTGC 60506 >seq52 Length=667068 Score = 93.3 bits (102), Expect = 8e-15 Identities = 206/301 (68%), Gaps = 11/301 (4%) Strand=Plus/Plus Query 16444 TTGCCATTCTGTATCACGATTT--GACAAGCGTGACAATGAGTCCGCTTCCACGTTGTCT 16501 || |||||| |||||| |||| |||| ||||| || ||||| ||||||||| Sbjct 46964 TTCCCATTCGGTATCAATATTTTTGACA--CGTGAACCCCTATCTGCTTCGACGTTGTCT 47021 Query 16502 TTAGATGCGATGTAGGATGCATAAACCCAGAGATCTCGACGTTCACACCAGTTCCATAGA 16561 ||||| || || ||||||||| | | ||||| |||| ||| ||||| ||||| | | Sbjct 47022 TTAGAAGCAATATAGGATGCAAATAACCAGATTTCTCTCGCTTCGCACCACTTCCAAATA 47081 Query 16562 TCTCTCGCTAAGTCGTGTAGACCTTCTGATCTCG--TACCACCTAGTTTATTGATGTAAG 16619 | || || || || | || | || ||| | | ||||||| | | || || || | Sbjct 47082 TTTCGCGTTATTTCATTAAGTC--TCGGATATTGAATACCACCCATTCGGTTTATATACG 47139 Query 16620 CTAGCGTGGTTGTGTTATCTACTCTTAGCAATATTTC-CGCGGAGTGTAAGTTTTTTGCA 16678 | || || || ||||| | ||| | |||||| || | | | |||||||||||| Sbjct 47140 AGACCGCTGTAGTATTATCAATTCTCAACAATATCTCACACTTTG-ATAAGTTTTTTGCG 47198 Query 16679 AATAATTTTAGAGCTATAAAAGCTGCTTTTAATTCTAAATAATTGATATGTAAAGATTTT 16738 || |||| ||| | | ||| ||||| |||||| | | |||| || || | | ||||| Sbjct 47199 AAACATTTGAGACCAAAAAACGCTGCCACTAATTCAAGACAATTAATGTG-ATACATTTT 47257 Query 16739 T 16739 | Sbjct 47258 T 47258 >seq35 Length=323869 Score = 93.3 bits (102), Expect = 8e-15 Identities = 286/432 (66%), Gaps = 13/432 (3%) Strand=Plus/Minus Query 16304 AACGCGTCTATCGCGAAAGCTTTCGGATCCCTGTCCCATGCACAGTAATTGATGCATTTG 16363 ||||| |||| ||| || || | || || | | ||| | |||||||| | ||||||| Sbjct 264454 AACGCATCTACCGCTAACGCCTCTGGGTCTCGATGCCAAGAACAGTAATCGTTGCATTTT 264395 Query 16364 TTATTGAACTCTGACGCGAAGAGGTCTATTTCTGGGATACCAAATATTTTAATTATCTTT 16423 ||| | ||||||||| | ||||| || ||||||| | ||| ||| | | Sbjct 264394 GAATTACATCTTGACGCGAACAAATCTATGGACGGAGTACCAAAAACTTTGTCTATTTCT 264335 Query 16424 TTGTATGCATAATCAGCTAGTTGCCATTCTGTATCACGA--TTTGACAAGCGTG-ACAAT 16480 | || || | | || ||||||||||||| | ||||||| |||| || | Sbjct 264334 GAAAACGCTGTATTTGACAATTCCCATTCTGTATCAATATTTTTGACA--CGTGAACCCT 264277 Query 16481 GAGTCCGCTTCCACGTTGTCTTTAGATGCGATGTAGGATGCATAAACCCAGAGATCTCGA 16540 | || ||||| || || |||||||| || || ||||||||| | | ||||| |||| Sbjct 264276 TA-TCTGCTTCGACATTCTCTTTAGACGCAATATAGGATGCAAATAACCAGATTTCTCTC 264218 Query 16541 CGTTCACACCAGTTCCATAGATCTCTCGCTAAGTCGTGTAGACCTTCTGATCT--CGTAC 16598 ||| ||||| ||||| | || || || || || | || | || ||| | | | Sbjct 264217 TCTTCGCACCACTTCCAAATATTTCGCGTTATTTCATTAAGTC--TCGGATATTCAATTC 264160 Query 16599 CACCTAGTTTATTGATGTAAGCTAGCGTGGTTGTGTTATCTACTCTTAGCAATATTTC-C 16657 |||| | | || || || | | || || || ||||| | ||| | |||||| || | Sbjct 264159 CACCCATTCGGTTTATATACGAAACCGCTGTAGTATTATCAATTCTCAACAATATCTCAC 264100 Query 16658 GCGGAGTGTAAG-TTTTTTGCAAATAATTTTAGAGCTATAAAAGCTGCTTTTAATTCTAA 16716 | | |||| |||||||| || |||| || || | ||| ||||| |||||| | Sbjct 264099 ACTTTG-ATAAGTTTTTTTGCGAAACATTTGAGGGCAAAAAACGCTGCCACTAATTCAAG 264041 Query 16717 ATAATTGATATG 16728 |||||| || || Sbjct 264040 ATAATTAATGTG 264029 >seq28 Length=1782156 Score = 80.6 bits (88), Expect = 5e-11 Identities = 123/173 (71%), Gaps = 7/173 (4%) Strand=Plus/Plus Query 7967 GAACTTCACATACCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGA--GAT 8024 ||||| |||| |||| | ||| ||| ||||| || || || ||| || || | | Sbjct 1668538 GAACTACACAAACCAAGATATTAGTTTTGCGGACCTGGCACGCGATTA--CAGGAACGGT 1668595 Query 8025 TAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAG 8084 ||| ||||| ||| || | ||||||||||| || || |||| ||||||||||||| Sbjct 1668596 TAGTGCGAGGGGATCGTAGTGTGAATCCTTTGGATGCAGCTTGTAGAGAACACGATATAG 1668655 Query 8085 CTTACTCAAAAAATCGTGAAAATTTGGAAGCTCGTCACGAGGCTGATAAAATT 8137 | ||||| || ||| || | | ||| |||||||| || ||||||||| Sbjct 1668656 CATACTCTCAA---CGTAAAGGTCTCCAAGGACGTCACGACGCCGATAAAATT 1668705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97969539122612