Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq111 179 5e-40 seq136 100 4e-16 >seq111 Length=5712365 Score = 179 bits (198), Expect = 5e-40 Identities = 189/249 (76%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 |||||| || ||| || ||| |||||| |||||| || || || | ||| | | ||| Sbjct 1383 CTGAATAGAACCATTATTTGCAATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCT 1442 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 || |||||| |||| | | ||| ||||| || ||||||||||||||||||| ||||| Sbjct 1443 TTCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCG 1502 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || || || || ||||| ||||| ||||| || |||||||||||||| ||||| || || Sbjct 1503 CCTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGC 1562 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||||||||| | || ||| |||||||| |||| | || || Sbjct 1563 GGTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAAT 1622 Query 62483 TTTATCTTT 62491 ||| ||||| Sbjct 1623 TTTTTCTTT 1631 Score = 150 bits (166), Expect = 2e-31 Identities = 223/314 (71%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 || |||||||||||||| ||||| | || | | |||||| | |||||| || || ||| Sbjct 2817 TTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAAG 2876 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 |||||||| | |||| || | ||| ||||| || ||||| | ||||||||| || ||| Sbjct 2877 TATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATTA 2936 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 ||||| || || | ||||||||| | || || || | |||| ||||| || ||| | Sbjct 2937 TTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACC--AGCTATTG 2994 Query 63462 --CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63519 |||| || || |||||| | || || || || || || || |||| || Sbjct 2995 GTGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGA 3054 Query 63520 TTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAA 63579 | | || || | |||||| |||||||| || || ||||| ||||| || |||| | | Sbjct 3055 TAAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCA 3114 Query 63580 GTAGAAAACAGCTA 63593 | ||||| || ||| Sbjct 3115 GAAGAAAGCAACTA 3128 Score = 95.1 bits (104), Expect = 2e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 63955 CACTAAATAGtttt-tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 64013 ||||||| |||||| |||||||||||||| | ||| || || || ||||| || || | Sbjct 3677 CACTAAA-AGTTTTCTTTGTTTCCTTGTGCAAATTAGAAACTGCAATTCTTGCTGCCAAT 3735 Query 64014 ATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 64073 || || ||||| ||||||| ||||| ||||||||| |||||||||| ||| | || Sbjct 3736 ATTGCGTAATCAGGATGTTTAGTAGTCATAGTGGCTGCAGTTTCGGCTGCAAGATTATCT 3795 Query 64074 AATTCTACCGT 64084 || || || || Sbjct 3796 AACTCAACTGT 3806 >seq136 Length=558006 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 33570 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33629 || ||||||||| || || | | ||||||||| ||||| | ||||| ||||| | || Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 33630 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAA 33689 || || || || || | ||||| || || || ||||| || |||||||| | | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAG 337710 Query 33690 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33737 ||| ||||| || ||||| || ||||||||| || ||||||||||| Sbjct 337709 ATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATG 337662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622914666582480