Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq13 113 4e-20 seq28 96.9 3e-15 >seq13 Length=4112475 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | |||||||||||| | ||||| ||| | |||||| | || ||||| | Sbjct 3685477 AATATGCAGATTTTTGTAAAAACACTGACTGGGAAAACCATCACCCTGGAGGTAGAAGCT 3685536 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| ||| | || ||| |||||| || |||||||| || ||||| || Sbjct 3685537 TCAGACACCATAGAGAACGTGAAAGCGAAGATTCAAGATAAAGAAGGAATTCCTCCAGAC 3685596 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | | || | | ||||| ||||| ||||| | |||| | || ||||| Sbjct 3685597 CAGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTAC 3685656 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || || || || || | || |||| ||| ||||| ||||||||| Sbjct 3685657 AACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAA 3685708 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||||||||| | || || ||| | |||||| | || |||| | Sbjct 3687040 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687099 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || ||| | || || ||||||| || |||||||| || ||||| || || Sbjct 3687100 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687159 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | | || | | ||||| ||||| ||||||| |||| || ||||| || Sbjct 3687160 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687219 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || ||||| || || | || |||| ||| ||||| ||||||||| Sbjct 3687220 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAA 3687269 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||||||||| | || || ||| | |||||| | || |||| | Sbjct 3687724 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687783 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || ||| | || || ||||||| || |||||||| || ||||| || || Sbjct 3687784 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687843 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | | || | | ||||| ||||| ||||||| |||| || ||||| || Sbjct 3687844 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687903 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || ||||| || || | || |||| ||| ||||| ||||||||| Sbjct 3687904 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAA 3687953 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||||||||| | || || ||| | |||||| | || |||| | Sbjct 3685707 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3685766 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | || ||| |||||| || |||||||| || ||||| || || Sbjct 3685767 AGACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCA 3685826 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | | || | | ||||| ||||| ||||||| |||| || ||||| || Sbjct 3685827 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3685886 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || ||||| || || | || |||| ||| ||||| ||||||||| Sbjct 3685887 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAA 3685936 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | || || ||| | |||||| | || ||||| | Sbjct 3687268 AATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAAGCTTC 3687327 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || ||| | || || ||||| || |||||||| || ||||| || || Sbjct 3687328 AGACACAATAGAGAACGTGAAGGCGAAGATACAAGATAAAGAAGGAATTCCTCCAGACCA 3687387 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | | || | | ||||| ||||||||||| | |||| || ||||| || Sbjct 3687388 GCAGCGTTTGATCTTTGCTGGCAAGCAACTCGAAGACGGGAGAACGCTCTCAGACTACAA 3687447 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| |||||||| || || | || |||| ||| ||||| ||||||||| Sbjct 3687448 CATCCAAAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAA 3687497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||||||||| | || || ||| | |||||| | || |||| | Sbjct 3687952 AATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3688011 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | || ||| |||||| || |||||||| || ||||| || || Sbjct 3688012 AGACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCA 3688071 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || | | || | | ||||| ||||| ||||||| |||| || ||||| || Sbjct 3688072 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3688131 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| || ||||| || || | || |||| ||| ||||| ||||||||| Sbjct 3688132 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAA 3688181 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAAC-TGGAAAATCGATCACCATCGAATTAGAATCAA 26826 |||||| | ||||||||||| | || |||||||| |||||| | || |||| | Sbjct 3687496 AATGCAGATCTTTGTAAAAACGCTCACGGGGAAAATC-ATCACCCTGGAGGTAGAGGCTT 3687554 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 ||||| || || | || ||| |||||| || |||||||| || ||||| || | Sbjct 3687555 CAGACACAATAGAAAACGTGAAAGCGAAGATTCAAGATAAAGAAGGAATGCCTCCAGACC 3687614 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | || | | || | | ||||| ||||| ||||| | |||| | || ||||| | Sbjct 3687615 AGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTACA 3687674 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||| || || || || || | || |||| || ||||| ||||||||| Sbjct 3687675 ACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTTCGACTTCGAGGAGGAA 3687725 >seq28 Length=1782156 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || |||||| | || || | ||| | ||| || Sbjct 1076669 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATTACTTTGGAAGTTGAAGCATCG 1076610 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| ||| ||| ||||||||||| || || || ||||| Sbjct 1076609 GACACTATTGAGAATGTAAAAGCAAAAATTCAGGACAAAGAAGGAATTCCGCCAGATCAG 1076550 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | | || || ||||| ||||||| | | | || |||||| Sbjct 1076549 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTTTCTGATTATAAC 1076490 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||||| |||||||| ||| | ||| | || || |||||||||| ||| Sbjct 1076489 ATTCAGAAAGAATCAACTCTTCATTTAGTTCTTCGACTTAGAGGTGGA 1076442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478637401856160