Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq28 118 9e-22 seq13 107 2e-18 seq111 86.0 5e-12 >seq28 Length=1782156 Score = 118 bits (130), Expect = 9e-22 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || |||||| | ||||| | ||||| || || Sbjct 1076669 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATTACTTTGGAAGTTGAAGCATCG 1076610 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || ||| | || ||| ||| ||| ||||||||||| || || || ||||| Sbjct 1076609 GACACTATTGAGAATGTAAAAGCAAAAATTCAGGACAAAGAAGGAATTCCGCCAGATCAG 1076550 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | || |||||||| ||||||| | | | ||||||||| Sbjct 1076549 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTTTCTGATTATAAC 1076490 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGATTC 24230 ||||| |||||||| || |||||||||| | || | ||||| |||| | || |||| Sbjct 1076489 ATTCAGAAAGAATCAACTCTTCATTTAGTTCTTCGACTTAGAGGTGGACGTTTATAATTC 1076430 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || |||||| | || || | ||||| || || Sbjct 1077125 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATCACTTTGGAAGTTGAAGCTTCA 1077066 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | |||||| || ||| || || ||||| || || || ||||| Sbjct 1077065 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 1077006 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| || || || |||||||| || | | | | ||||| ||| Sbjct 1077005 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGGCGTATACTTTCTGATTACAAC 1076946 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||||||| |||| | || | || ||||||| || Sbjct 1076945 ATTCAAAAGGAATCTACACTTCACCTTGTACTTCGACTGAGAGGTGG 1076899 >seq13 Length=4112475 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| | || || ||| | || ||| | || || ||||| Sbjct 3687040 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687099 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || || ||||||| || |||||||| || ||||| || || Sbjct 3687100 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687159 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | | ||||||||||| ||||||| |||| || || || || Sbjct 3687160 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687219 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || ||||| || || |||| || ||| | || | |||||||| Sbjct 3687220 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3687268 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| | || || ||| | || ||| | || || ||||| Sbjct 3687724 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687783 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || || ||||||| || |||||||| || ||||| || || Sbjct 3687784 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687843 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | | ||||||||||| ||||||| |||| || || || || Sbjct 3687844 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687903 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || ||||| || || |||| || ||| | || | |||||||| Sbjct 3687904 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3687952 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | |||||||||||| | ||||| ||| | || ||| | || || || || Sbjct 3685477 AATATGCAGATTTTTGTAAAAACACTGACTGGGAAAACCATCACCCTGGAGGTAGAAGCT 3685536 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||| ||| | || ||| |||||| || |||||||| || ||||| || Sbjct 3685537 TCAGACACCATAGAGAACGTGAAAGCGAAGATTCAAGATAAAGAAGGAATTCCTCCAGAC 3685596 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | |||| | | ||||||||||| ||||| | |||| | || || || Sbjct 3685597 CAGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTAC 3685656 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || || || || || |||| || ||| | || | |||||||| Sbjct 3685657 AACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3685707 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||||||||| | || || ||| | || ||| | || || ||||| Sbjct 3685707 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3685766 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || ||| |||||| || |||||||| || ||||| || || Sbjct 3685767 AGACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCA 3685826 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | | ||||||||||| ||||||| |||| || || || || Sbjct 3685827 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3685886 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || ||||| || || |||| || ||| | || | |||||||| Sbjct 3685887 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3685935 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | || || ||| | || ||| | || || ||||| Sbjct 3687952 AATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3688011 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || ||| |||||| || |||||||| || ||||| || || Sbjct 3688012 AGACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCA 3688071 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | | ||||||||||| ||||||| |||| || || || || Sbjct 3688072 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3688131 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || ||||| || || |||| || ||| | || | |||||||| Sbjct 3688132 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3688180 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | || || ||| | || ||| | || || ||||| Sbjct 3688180 AATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3688239 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || ||| |||||| || |||||||| || ||||| || || Sbjct 3688240 AGACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCA 3688299 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | | ||||| ||||| ||||| | |||| || || || || Sbjct 3688300 GCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGACGGGAGAACGCTCTCAGACTACAA 3688359 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 ||| ||||| || |||||| | |||||||| ||| Sbjct 3688360 CATCCAAAAGGAGTCTACATTGCATTTAGTATTA 3688393 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | || || ||| | || ||| | || || || || Sbjct 3687268 AATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAAGCTTC 3687327 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || || ||||| || |||||||| || ||||| || || Sbjct 3687328 AGACACAATAGAGAACGTGAAGGCGAAGATACAAGATAAAGAAGGAATTCCTCCAGACCA 3687387 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | | ||||||||||||||||| | |||| || || || || Sbjct 3687388 GCAGCGTTTGATCTTTGCTGGCAAGCAACTCGAAGACGGGAGAACGCTCTCAGACTACAA 3687447 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||| || || |||| || ||| | || | |||||||| Sbjct 3687448 CATCCAAAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3687496 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAAC-TGGAAAATCGATTACCATCGAAGTCGAGGCCA 24048 |||||| | ||||||||||| | || |||||||| || ||| | || || ||||| Sbjct 3687496 AATGCAGATCTTTGTAAAAACGCTCACGGGGAAAATC-ATCACCCTGGAGGTAGAGGCTT 3687554 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||| || || | || ||| |||||| || |||||||| || ||||| || | Sbjct 3687555 CAGACACAATAGAAAACGTGAAAGCGAAGATTCAAGATAAAGAAGGAATGCCTCCAGACC 3687614 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||| | |||| | | ||||||||||| ||||| | |||| | || || || | Sbjct 3687615 AGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTACA 3687674 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || || || || || |||| || ||| | || | |||||||| Sbjct 3687675 ACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTTCGACTTCGAGGAGGA 3687724 >seq111 Length=5712365 Score = 86.0 bits (94), Expect = 5e-12 Identities = 184/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 132662 GGATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTA 132721 |||||| |||| || |||| ||||| | ||| |||||||| | | | | ||||||| Sbjct 2126 GGATAATAGTTGACATCAATTACTTTATCCAAATTCTTAGTGACTATTTTTGTCACTTTA 2185 Query 132722 TATAGCGATTCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGACGGCAATC 132781 || || || || ||| ||||||| || | || ||||||||||||| Sbjct 2186 CGGAGTTTTTGGAAATCGAAGGTTTTAGTAGCGGAATTCACGAACATATTGACGGCAATC 2245 Query 132782 GAGGCCAAATTGCATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACAC 132841 || || ||||||||||| || || | | | ||| |||||||| |||| |||| Sbjct 2246 GAAGCTAAATTGCATACAGCGACTTCGTCTGGACTGGAATATTGTACGATCTCTGTACAC 2305 Query 132842 AAATTACTGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTACGTTATCT 132901 |||||||| | ||| ||| | |||| ||||| ||| ||| || |||| Sbjct 2306 AAATTACTACATTTAATTGTTCCTATATTTTGGTGATTTGATTTACGGTTGCAGTGATCT 2365 Query 132902 TTATGCAACATGTACGGACCTCCGGTTTCGACCTG 132936 |||| || |||||| ||| || ||||| || || Sbjct 2366 TTATACAGCATGTAAGGAGTCCCTGTTTCCACTTG 2400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429914107927590