Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq13 122 7e-23 >seq13 Length=4112475 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| || |||||||||||||| || ||||||||||| | Sbjct 3685706 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAG 3685647 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | |||| |||| ||| ||||| ||| | || | ||||| ||||| ||| Sbjct 3685646 AGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3685587 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||| | | ||||| | | | ||||| | || Sbjct 3685586 ATTCCTTCTTTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTACC 3685527 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| |||||||||||| || ||||| ||||| |||||||||||||| || Sbjct 3685526 TCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCATATT 3685477 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| || |||||||||||||| || ||||||||||| | Sbjct 3687723 CCTCCTCGAAGTCGAAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAG 3687664 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | |||| |||| ||| ||||| ||| | || | ||||| ||||| |||| Sbjct 3687663 AGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGC 3687604 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||| | | ||||| | | | ||||| | ||| Sbjct 3687603 ATTCCTTCTTTATCTTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACC 3687544 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||| |||| || || |||||||| ||||| ||||||||| Sbjct 3687543 TCCAGGGTGATGATTTTCCCCGTGAGCGTTTTTACAAAGATCTGCATT 3687496 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| || ||||||||||| ||||| ||||||||||| | Sbjct 3687495 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTGAG 3687436 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| || | ||| ||||| ||| | || | ||||| ||||| ||| Sbjct 3687435 AGCGTTCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687376 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || || | | |||||| | | | ||||| | || Sbjct 3687375 ATTCCTTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTACC 3687316 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||| || || |||||||| ||||| ||||||||| Sbjct 3687315 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCATT 3687268 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| || ||||||||||| || || ||||||||||| | Sbjct 3688179 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3688120 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| ||| ||||| ||| | || | ||||| ||||| ||| Sbjct 3688119 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3688060 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||| | | ||||| | | | ||||| | ||| Sbjct 3688059 ATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACC 3688000 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||| || || |||||||| ||||| ||||||||| Sbjct 3687999 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCATT 3687952 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| || ||||||||||| || || ||||||||||| | Sbjct 3687267 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3687208 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| ||| ||||| ||| | || | ||||| ||||| ||| Sbjct 3687207 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687148 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || ||||| || || ||||| |||||| | | | ||||| | ||| Sbjct 3687147 ATTCCTTCTTTATCTTGAATCTTTGC--CTTCACATTCTCTATTGTGTCTGAAGCCTCTA 3687090 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||| || || |||||||| ||||| || |||||| Sbjct 3687089 CCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATT 3687040 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| || ||||||||||| || || ||||||||||| | Sbjct 3687951 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3687892 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| ||| ||||| ||| | || | ||||| ||||| ||| Sbjct 3687891 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687832 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || ||||| || || ||||| |||||| | | | ||||| | ||| Sbjct 3687831 ATTCCTTCTTTATCTTGAATCTTTGC--CTTCACATTCTCTATTGTGTCTGAAGCCTCTA 3687774 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||| || || |||||||| ||||| || |||||| Sbjct 3687773 CCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATT 3687724 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | ||| |||| || ||||||||||| || || ||||||||||| | Sbjct 3685934 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3685875 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| ||| ||||| ||| | || | ||||| ||||| ||| Sbjct 3685874 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3685815 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||| | | ||||| | | | ||||| | ||| Sbjct 3685814 ATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACC 3685755 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||| || || |||||||| ||||| || |||||| Sbjct 3685754 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCATT 3685707 Score = 105 bits (116), Expect = 5e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 16726 TACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTC 16785 ||| | ||||| || ||||||||||| ||||||||||| | | ||| | |||| || Sbjct 3688390 TACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTCTGAGAGCGTTCTCCCGTCTTC 3688331 Query 16786 CAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGC 16845 || ||||||||| ||| | || | ||||| ||||| ||| | || ||||| || Sbjct 3688330 CAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTG 3688271 Query 16846 AATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTT 16905 ||| | | ||||| | | | ||||| | ||| |||| |||||||||||| Sbjct 3688270 AATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGTTTT 3688211 Query 16906 TCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || |||||||| ||||| ||||||||| Sbjct 3688210 CCCTGTGAGCGTTTTTACAAAGATCTGCATT 3688180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 |||||||| || | || |||| || |||||||||||||| || ||||||||||| | Sbjct 3687039 CCTCCTCGAAGTCGAAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAG 3686980 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | |||| |||| ||| ||||| ||| | || | ||||| ||||| ||| Sbjct 3686979 AGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3686920 Query 16829 ACGCCCTCTTTGTC 16842 | || ||||| || Sbjct 3686919 ATTCCTTCTTTATC 3686906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405067373172220