Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq273 255 4e-63 seq1070 131 1e-25 seq473 131 1e-25 seq2202 127 1e-24 seq376 125 5e-24 seq413 118 7e-22 seq295 118 7e-22 seq443 113 3e-20 seq28 107 1e-18 seq758 98.7 7e-16 seq158 98.7 7e-16 >seq273 Length=5066936 Score = 255 bits (282), Expect = 4e-63 Identities = 293/394 (74%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 ||| ||||||| | | ||||| |||||||| || || |||||||| ||||||||||| Sbjct 2606059 CACCATGGGGAGCGTCAACGTTAATCGTAACGTCAGCGATGCGTTCTATCGCTACAAAAT 2606000 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 |||| | ||| || || |||||||| ||||| |||||||| |||||||| || || || Sbjct 2605999 GCCGAGGATCCAGGCGAAAGTCGAGGGCAAGGGTAACGGTATAAAAACCGTTATCGTGAA 2605940 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 ||| || || ||||| || |||| | || ||||| || ||||| || || ||||| Sbjct 2605939 TATGGTCGACGTGGCTAAAGCAATCGGCAGACCGGCCACTTATCCGACCAAGTACTTCGG 2605880 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGG 6397 |||||||||||||| ||||| || || ||| ||||||||| || || || || ||||| Sbjct 2605879 CTGCGAACTTGGCGCCCAGACTCAATTCGATTTCAAAAACGAACGATTTATTGTAAACGG 2605820 Query 6398 ATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCT 6457 || || || || |||| |||| ||| | ||||| || || ||||| || | || || Sbjct 2605819 TTCCCACGACGCTACCAAATTGCAAGACCTCCTTGATGGATTCATTCGGAAATACGTACT 2605760 Query 6458 GTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCAT 6517 || | | |||||||| || || |||||||| || || | | |||| || || Sbjct 2605759 ATGCCCCGCCTGCGATAATCCTGAAACCGAGCTGATGGTCAGTGCAAAGAAGGGTACGAT 2605700 Query 6518 CTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGC 6551 |||||||| || ||||||||||| || |||||| Sbjct 2605699 ATCTCAGGGGTGTAAAGCGTGCGGCTATCATGGC 2605666 >seq1070 Length=5571 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 795 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 854 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 855 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 889 >seq473 Length=32739 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25655 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 25714 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 25715 GGTTATATTTAGCCTTA 25731 >seq2202 Length=226 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 82 GCCCGTTCCCATGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 141 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||| ||||||||||| Sbjct 142 ATCCATTCATGCGCGTCACTAGTTAGATGACGA 174 >seq376 Length=25404 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 875 CTCTCTCTTCAAAGTTCTTTTCAACTATCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 816 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 815 GGTTATATTTAGCCTTA 799 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| || |||| | |||||||||||| ||||||||||| || |||||||| Sbjct 8431 AAGCCCGTTACCGTGGCAGAGGTTTCGCTAGAAAGTAGATAGGGACAGAGGGAATCTCGT 8372 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8371 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8337 >seq413 Length=693780 Score = 118 bits (130), Expect = 7e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 ||||| ||||||||||| || | ||| | || ||||||||||| || || || || Sbjct 292389 TTTTGGATATTGTAATCGGAGAGGGTGCGTCCATCTTCTAATTGTTTCCCAGCGAAAATA 292330 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 || ||||| ||||| | || | ||||| |||||| || ||| ||||||||| | Sbjct 292329 AGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCA 292270 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | ||| ||| | ||| || || | ||||| ||||||||||| | |||||| |||||| Sbjct 292269 ATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAT 292210 Query 38310 ATCTGCAT 38317 |||||||| Sbjct 292209 ATCTGCAT 292202 >seq295 Length=121342 Score = 118 bits (130), Expect = 7e-22 Identities = 74/79 (94%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62635 CTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 62694 Query 20007 GGTAATATTT--AGCCTTA 20023 ||| |||||| ||||||| Sbjct 62695 GGTTATATTTAGAGCCTTA 62713 >seq443 Length=7598 Score = 113 bits (124), Expect = 3e-20 Identities = 73/79 (92%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 7066 CTCTCTCTTCAAAGTTCTTTTCCACATTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 7007 Query 20007 GGTAATATTT--AGCCTTA 20023 ||| |||||| ||||||| Sbjct 7006 GGTTATATTTAGAGCCTTA 6988 >seq28 Length=1782156 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| || | || | ||||| || ||||||||||| |||||||||| Sbjct 1076897 TACCACCTCTCAGTCGAAGTACAAGGTGAAGTGTAGATTCCTTTTGAATGTTGTAATCAG 1076956 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| |||| || | |||||| || || || || | | || ||||| | | Sbjct 1076957 AAAGTATACGCCCGTCCTCGAGTTGTTTACCAGCGAAAATCAATCTCTGCTGATCTGGTG 1077016 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || |||||| || ||||| | | ||||||| | ||||| Sbjct 1077017 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCTGAAGCTTCAA 1077076 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || |||||||| || || | || || ||||| || ||||| Sbjct 1077077 CTTCCAAAGTGATAGTTTTTCCTGTAAGAGTCTTAACGAAAATTTGCAT 1077125 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| ||||| || | || | |||||||| ||||| || || |||||||||| Sbjct 1077125 TACCACCCCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAG 1077184 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | |||| |||| || | |||||| || || || || | | || ||||||| | Sbjct 1077185 AAAGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAAATCAATCTCTGCTGATCGGGTG 1077244 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || |||||| || ||||| | | ||||||| | ||||| Sbjct 1077245 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCTGAAGCTTCAA 1077304 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || || | || || ||||| || ||||| Sbjct 1077305 CTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTGACGAAAATTTGCAT 1077353 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| ||||| || | || | |||||||| ||||| || || |||||||||| Sbjct 1077353 TACCACCCCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAG 1077412 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | |||| |||| || | |||||| || || || || | | || ||||||| | Sbjct 1077413 AAAGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAAATCAATCTCTGCTGATCGGGTG 1077472 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || |||||| || ||||| | | ||||||| | ||||| Sbjct 1077473 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCTGAAGCTTCAA 1077532 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || || | || || ||||| || ||||| Sbjct 1077533 CTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACGAAGATTTGCAT 1077581 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | || | || ||||||||||| || || ||||| || |||||||| Sbjct 1076443 CCACCTCTAAGTCGAAGAACTAAATGAAGAGTTGATTCTTTCTGAATGTTATAATCAGAA 1076502 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||| ||||| ||||| || | | || ||||| | || Sbjct 1076503 AGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGCGGA 1076562 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| ||||||| || ||||||| | ||| || ||||||| Sbjct 1076563 ATTCCTTCTTTGTCCTGAATTTTTGCTTTTACATTCTCAATAGTGTCCGATGCTTCAACT 1076622 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| ||||| || || | || || ||||| || ||||| Sbjct 1076623 TCCAAAGTAATGGTTTTTCCTGTAAGAGTCTTGACGAAGATTTGCAT 1076669 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| || | || | ||||| || ||||| ||||| |||||||| | Sbjct 1078037 TACCACCTCTCAGTCGGAGTACAAGGTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTG 1078096 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | |||||| || || || |||| | ||| || || | | Sbjct 1078097 AAAGTGTGCGCCCATCTTCAAGTTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGTG 1078156 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || || ||||||| || ||||| | | |||||| |||| Sbjct 1078157 GGATTCCTTCCTTATCTTGAATTTTTGCTTTGACATTTTCAATGGTATCTGATGCCTCAA 1078216 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 | || | || || |||||||| ||||| || || || || |||||||||||| Sbjct 1078217 CCTCAAGGGTTATTGTTTTACCAGTCAATGTCTTAACAAAGATCTGCATGTTT 1078269 >seq758 Length=6947 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 5371 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 5312 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 5311 GGTTATATTTAG 5300 >seq158 Length=109861 Score = 98.7 bits (108), Expect = 7e-16 Identities = 69/79 (87%), Gaps = 5/79 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||| ||||||| |||||||||||||| ||||||||||| || |||||||| Sbjct 78866 AAGCCCGTTTCCTTGGCAGTGGTTTCGCTAGAAAGTAGATAGGGACAGAGGGAATCTCGT 78807 Query 25957 TAATCCTTTCATGCGCGTC 25975 |||||| |||||||||||| Sbjct 78806 TAATCCATTCATGCGCGTC 78788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334930144697918