Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq111 183 4e-41 seq136 109 7e-19 >seq111 Length=5712365 Score = 183 bits (202), Expect = 4e-41 Identities = 190/249 (76%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 |||||| || ||| || ||| |||||| |||||| || || || | ||| | | ||| Sbjct 1383 CTGAATAGAACCATTATTTGCAATAATCTCATTCTTCATGTCCTCGTCCCAGAGATCTCT 1442 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 || |||||| |||| | | ||| ||||| || ||||||||||||||||||| ||||| Sbjct 1443 TTCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCCAGACAGTACTCG 1502 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || || || || ||||| ||||| ||||| ||||||||||||||||| ||||| || || Sbjct 1503 CCTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCCTAAAATCTGTGC 1562 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||||||||| | || ||| |||||||| |||| | || || Sbjct 1563 GGTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCGTGTTTTGCAAT 1622 Query 62338 TTTATCTTT 62346 ||| ||||| Sbjct 1623 TTTTTCTTT 1631 Score = 150 bits (166), Expect = 2e-31 Identities = 223/314 (71%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || |||||||||||||| ||||| | || | | |||||| | |||||| || || ||| Sbjct 2817 TTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAAG 2876 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 |||||||| | |||| || | ||| ||||| || ||||| | ||||||||| || ||| Sbjct 2877 TATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATTA 2936 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 ||||| || || | ||||||||| | ||||| || |||| || || || ||| | Sbjct 2937 TTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACC--AGCTATTG 2994 Query 63317 --CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63374 |||| || || |||||| | || || || || || || || |||| || Sbjct 2995 GTGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGA 3054 Query 63375 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 63434 | | || || | |||||| || ||||| ||||| ||||||||||| || |||| | | Sbjct 3055 TAAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCA 3114 Query 63435 GTAGAAAACAGCTA 63448 | ||||| || ||| Sbjct 3115 GAAGAAAGCAACTA 3128 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/246 (67%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 || ||||| || | |||| || || | ||| || || || || || | | | | | Sbjct 2225 ACGAACATATTGACGGCAATCGAAGCTAAATTGCATACAGCGACTTCGTCTGGACTGGAA 2284 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 ||||||| ||||| || || | ||||||||| || || ||||||| |||||| ||||| Sbjct 2285 TATTGTACGATCTCTGTACACAAATTACTACATTTAATTGTTCCTATATTTTGGTGATTT 2344 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 || ||| || ||| ||||| || ||| | ||||| || ||||| | || | Sbjct 2345 GATTTACGGTTGCAGTGATCTTTATACAGCATGTAAGGAGTCCCTGTTTCCACTTGTGCC 2404 Query 62912 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT 62971 || ||| || |||| | | ||| ||| | ||| ||| ||||||||||| || Sbjct 2405 ATTAGAATAGCAGTCCATAAGTCTCTAGCTTGAATTTGTCGTTTATATCTCTTTTCATTT 2464 Query 62972 TCGTAT 62977 || ||| Sbjct 2465 TCATAT 2470 >seq136 Length=558006 Score = 109 bits (120), Expect = 7e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 32927 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 32986 || ||| |||||||| || | | ||||||||| ||||| | ||||| ||||| | ||| Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 32987 AAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAA 33046 || || || ||||| | ||||| || || || ||||| || |||||||| | | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAG 337710 Query 33047 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 33094 ||| ||||| || ||||| || ||||||||| || ||||||||||| Sbjct 337709 ATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATG 337662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633598908568800