Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq28 129 5e-25 seq413 118 9e-22 >seq28 Length=1782156 Score = 129 bits (142), Expect = 5e-25 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || ||| |||| || | ||||| || | || Sbjct 1076669 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATTACTTTGGAAGTTGAAGCATCG 1076610 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || ||||||||| ||| ||||||||||| ||||| || || Sbjct 1076609 GACACTATTGAG--AATGTAAAAGCAAAAATTCAG-GACAAAGAAGGAATTCCGCCAGAT 1076553 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || || ||| | ||||||| ||||| | ||||| Sbjct 1076552 CAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTTTCTGATTAT 1076493 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || ||||| |||||||| || || |||||||| || | || ||||| ||| Sbjct 1076492 AACATTCAGAAAGAATCAACTCTTCATTTAGTTCTTCGACTTAGAGGTGGA 1076442 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||| | || || ||| ||||||| | ||||| || | ||| Sbjct 1077809 ATGCAAATCTTTGTTAAGACTCTCACAGGAAAAACCATCACTTTGGAAGTTGAAGCCTCT 1077750 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| ||| | || ||||||| ||| || || ||||| || ||||| ||||| Sbjct 1077749 GACACTATTGAGAATGTAAAGGCAAAAATTCA-AGATAAGGAAGGAATCCCACCAGACCA 1077691 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | || || || || |||||| | || |||| ||||| | ||||| || Sbjct 1077690 GCAAAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGACGCACACTTTCAGATTATAA 1077631 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || ||||| || || || | || || | || ||||| || Sbjct 1077630 TATTCAGAAGGAATCTACTCTCCACCTTGTACTTCGACTGAGAGGTGG 1077583 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || || ||| ||||||| | ||||| || | ||| Sbjct 1076897 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTCGAAGCCTCT 1076838 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| |||| |||| ||| || || ||||| || || || || Sbjct 1076837 GACACTATTGAAAATGTCA---AAGCCAAAATTCA-AGATAAGGAAGGAATCCCCCCAGA 1076782 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | || || || || |||||| | || |||| ||||| | ||||| Sbjct 1076781 TCAGCAGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCAGATTA 1076722 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| || ||||| || || || | || || | || ||||| || Sbjct 1076721 CAACATTCAGAAGGAATCAACACTTCACCTTGTACTTCGACTGAGAGGTGG 1076671 >seq413 Length=693780 Score = 118 bits (130), Expect = 9e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| ||||| ||||| || | || |||||| |||| || | || || || | Sbjct 292199 ACGATGCAGATATTCGTAAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTAGAAGCT 292258 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || |||||||| || ||||| ||| ||| ||||| ||||| ||||| || || Sbjct 292259 TCAGACACTATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGAT 292318 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || ||||||| || || |||||||||||||||| ||||| | ||||||| Sbjct 292319 CAGCAACGACTTATTTTCGCTGGGAAACAATTAGAAGATGGACGCACCCTCTCCGATTAC 292378 Query 25176 AATATTCAAAAAG 25188 ||||| ||||||| Sbjct 292379 AATATCCAAAAAG 292391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433305935209070