Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq136 156 5e-33 seq163 120 3e-22 seq65 113 5e-20 >seq136 Length=558006 Score = 156 bits (172), Expect = 5e-33 Identities = 146/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || ||||| ||||||| |||||||||||| ||||| ||||| ||||| |||| |||| Sbjct 337828 ATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTGG 337769 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || || || | || || ||||| |||||||| ||| |||| || || ||| Sbjct 337768 AAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAGA 337709 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| || |||||||| |||||||| || ||||||| ||| ||| || || Sbjct 337708 TTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATGAGATATGAAGTGC 337649 Query 93542 TTCTCA 93547 |||||| Sbjct 337648 TTCTCA 337643 Score = 102 bits (112), Expect = 9e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 93125 GATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAAT 93184 || |||| |||||||||||||| | || || | || || | |||||| | |||||| Sbjct 338221 GAGATCAGTTCATTGCTGAATGTAAGGCCAGGCATGAGACCCCTTTTCTTCAACCAAAAA 338162 Query 93185 ATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGT 93244 || | || ||||||||| || || || ||||||||||| |||||||| | | ||| Sbjct 338161 ATGGCGGCGAAACTACCACTGAAGAAGATGCCTTCCACGGCAGCAAATGCGATTACCCGT 338102 Query 93245 TCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTA 93304 || | ||| | |||| || | | ||||| || | ||||| | |||||| || | Sbjct 338101 TCAGGGAAAGTGGCGGTTTTGTGGTTTATCCAATTCAGTGCCCAGTTGGCTTTCTTAGCA 338042 Query 93305 ATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || ||||| | || || |||||||||| Sbjct 338041 ACGCATGGTAGATTCTCAATCGCGTTAAATA 338011 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || |||||||| |||||||| ||||||||||| || ||||| || || |||||||| | | Sbjct 337517 TTAGAAAGATCTACTTCTTCAACAGTCCAAAAAGAAGCTTCGGCCTTCTTGTACATTTGC 337458 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || || || | | ||||| ||||||| ||||| | | || |||||||| ||||| Sbjct 337457 CAAATATCGGGCCACTGAATAGGAAATACAACAAATCTACGTGGATTATCTTTAAGTAAT 337398 Query 93701 GGCTC 93705 || || Sbjct 337397 GGTTC 337393 >seq163 Length=977797 Score = 120 bits (132), Expect = 3e-22 Identities = 80/88 (91%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| | |||||||| | |||||| Sbjct 501991 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTTTGGTTCCCGGTAGGGAGC 502050 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||| ||||| Sbjct 502051 GTGGGTTCGAACCCCACACCTGGCAAAT 502078 >seq65 Length=7044304 Score = 113 bits (124), Expect = 5e-20 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 6084462 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 6084403 Query 126327 GTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||| | ||||| Sbjct 6084402 GTTCGAACCCCACACTTAGCAAAT 6084379 Score = 111 bits (122), Expect = 2e-19 Identities = 76/83 (92%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 6084245 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTCTGGGAGCGTGG 6084186 Query 126327 GTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||| | |||| Sbjct 6084185 GTTCGAACCCCACACTTAGCAAA 6084163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556831717944720