Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq413 120 3e-22 seq28 120 3e-22 >seq413 Length=693780 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || ||||| | || |||||||| | || ||||| || ||| | | Sbjct 292201 GATGCAGATATTCGTAAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTAGAAGCTTC 292260 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | || ||| || || |||||||| || ||||| || ||||| Sbjct 292261 AGACACTATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCA 292320 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||||| ||||| || || || ||||| ||||| ||| |||||| ||||||||||||| Sbjct 292321 GCAACGACTTATTTTCGCTGGGAAACAATTAGAAGATGGACGCACCCTCTCCGATTACAA 292380 Query 22398 CATTCAAAAAG 22408 || ||||||| Sbjct 292381 TATCCAAAAAG 292391 >seq28 Length=1782156 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || |||||||| || || || |||||||| | || ||||| || || | Sbjct 1078269 AAACATGCAGATCTTTGTTAAGACATTGACTGGTAAAACAATAACCCTTGAGGTTGAGGC 1078210 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||||| | || || ||||| |||||||||||| ||||| || || ||||| || Sbjct 1078209 ATCAGATACCATTGAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGA 1078150 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || ||| | | || || || || ||||| | || ||| ||||| | || ||||| Sbjct 1078149 CCAGCAAAGATTAATCTTCGCTGGTAAACAACTTGAAGATGGGCGCACACTTTCAGATTA 1078090 Query 22395 CAACATTCAAAAAGAATCCAC 22415 ||||||||| || ||||| || Sbjct 1078089 CAACATTCAGAAGGAATCAAC 1078069 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||| | || || ||||| ||||| | ||||| ||| | | Sbjct 1077125 ATGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATCACTTTGGAAGTTGAAGCTTCA 1077066 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||||||||| ||||| || || ||||| ||||| Sbjct 1077065 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 1077006 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| | ||||| || | | || ||||||||| Sbjct 1077005 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGGCGTATACTTTCTGATTACAAC 1076946 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| ||||| || Sbjct 1076945 ATTCAAAAGGAATCTAC 1076929 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || ||||| ||||| | ||||| ||| | | Sbjct 1077353 ATGCAAATTTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCA 1077294 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||||||||| ||||| || || ||||||||||| Sbjct 1077293 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAG 1077234 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| | ||||| || || | || ||||||||| Sbjct 1077233 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAAC 1077174 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || | || | |||||| | || ||| Sbjct 1077173 ATCCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGGGGTGGT 1077126 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| ||| | || || ||||| ||||| | ||||| ||| | | Sbjct 1077581 ATGCAAATCTTCGTTAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCA 1077522 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||||||||| ||||| || || ||||||||||| Sbjct 1077521 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAG 1077462 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| | ||||| || || | || ||||||||| Sbjct 1077461 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAAC 1077402 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || | || | |||||| | || ||| Sbjct 1077401 ATCCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGGGGTGGT 1077354 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| ||| | || || |||||| |||| | ||||| ||| | || Sbjct 1078037 ATGCAAATCTTTGTTAAGACTCTCACAGGAAAAACGATCACCTTGGAAGTTGAAGCATCC 1077978 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||||||| ||||| || || ||||| ||||| Sbjct 1077977 GACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 1077918 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| | |||||| ||||| | || ||||| || Sbjct 1077917 CAGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCAGATTATAAT 1077858 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | ||| | || | ||| || | || ||| Sbjct 1077857 ATTCAGAAGGAATCAACACTTCATCTTGTACTCCGACTGAGAGGTGGT 1077810 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || ||||| ||||| | ||||| ||| || | Sbjct 1076897 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTCGAAGCCTCT 1076838 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||||||||||| ||||| || || || || ||||| Sbjct 1076837 GACACTATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAG 1076778 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| | |||||| ||||| | || ||||||||| Sbjct 1076777 CAGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCAGATTACAAC 1076718 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 1076717 ATTCAGAAGGAATCAAC 1076701 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| ||| | || || ||||| ||||| | ||||| ||| || | Sbjct 1077809 ATGCAAATCTTTGTTAAGACTCTCACAGGAAAAACCATCACTTTGGAAGTTGAAGCCTCT 1077750 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || |||||||||||| ||||| || || ||||| || || Sbjct 1077749 GACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGACCAG 1077690 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| | |||||| ||||| | || ||||| || Sbjct 1077689 CAAAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGACGCACACTTTCAGATTATAAT 1077630 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 1077629 ATTCAGAAGGAATCTAC 1077613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419706627712570