Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq28 100 2e-16 seq13 98.7 7e-16 seq299 87.8 1e-12 >seq28 Length=1782156 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || |||||||| || ||||| |||||| | Sbjct 1077809 ATGCAAATCTTTGTTAAGACTCTCACAGGAAAAACCATCACTTTGGAAGTTGAAGCCTCT 1077750 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||||| ||||| || || | || | |||| Sbjct 1077749 GACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGACCAG 1077690 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||| | ||||| ||||| |||||||| || ||| | || | | ||||| ||| Sbjct 1077689 CAAAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGACGCACACTTTCAGATTATAAT 1077630 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||||||||||||||| || Sbjct 1077629 ATTCAGAAGGAATCTACTCTCCA 1077607 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || ||||| || ||| ||||| ||||| | Sbjct 1078037 ATGCAAATCTTTGTTAAGACTCTCACAGGAAAAACGATCACCTTGGAAGTTGAAGCATCC 1077978 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||||| ||||| || || | || | | || Sbjct 1077977 GACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 1077918 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| ||||| |||||||| || ||| || | | ||||| ||| Sbjct 1077917 CAGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCAGATTATAAT 1077858 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTA 22043 |||||||||||||| || |||||| | ||| Sbjct 1077857 ATTCAGAAGGAATCAACACTTCATCTTGTA 1077828 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 21829 GCAAA-ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAA 21887 ||||| ||||| || ||| |||| ||||| || || ||||| || ||| | || || Sbjct 1078271 GCAAACATGCAGATCTTTGTTAAGACATTGACTGGTAAAACAATAACCCTTGAGGTTGAG 1078212 Query 21888 GCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTA 21947 || |||| || | | || | || ||||||| ||||| || || | || | Sbjct 1078211 GCATCAGATACCATTGAAAATGTCAAAGCAAAAATTCAAGATAAGGAAGGAATCCCACCA 1078152 Query 21948 AACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGAT 22007 |||| || ||| | ||||| ||||| |||||||| |||||| || | | ||| Sbjct 1078151 GACCAGCAAAGATTAATCTTCGCTGGTAAACAACTTGAAGATGGGCGCACACTTTCAGAT 1078092 Query 22008 TACAATATTCAGAAGGAATCTACTCTTCA 22036 ||||| |||||||||||||| || ||||| Sbjct 1078091 TACAACATTCAGAAGGAATCAACACTTCA 1078063 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || || ||||||||||| ||||| ||||| | Sbjct 1076669 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATTACTTTGGAAGTTGAAGCATCG 1076610 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||||| || ||||| || | || | | || Sbjct 1076609 GACACTATTGAGAATGTAAAAGCAAAAATTCAGGACAAAGAAGGAATTCCGCCAGATCAG 1076550 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || ||||| |||||| || | | ||||| || Sbjct 1076549 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTTTCTGATTATAAC 1076490 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAAT 22071 |||||||| ||||| ||||||||| | || | || | |||| ||| || ||||| Sbjct 1076489 ATTCAGAAAGAATCAACTCTTCATTTAGTTCTTCGACTTAGAGGTGGACGTTTATAAT 1076432 >seq13 Length=4112475 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | || || |||||||| ||| |||| || || | Sbjct 3687040 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687099 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||| ||| |||||||| || | ||| | |||| Sbjct 3687100 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687159 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||||||||| ||||| |||||| | ||| | | || ||||| Sbjct 3687160 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687219 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| || || || ||||| |||| | || | ||||||||| Sbjct 3687220 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3687268 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | || || |||||||| ||| |||| || || | Sbjct 3687724 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687783 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | ||| ||| ||| |||||||| || | ||| | |||| Sbjct 3687784 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687843 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||||||||| ||||| |||||| | ||| | | || ||||| Sbjct 3687844 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687903 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| || || || ||||| |||| | || | ||||||||| Sbjct 3687904 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3687952 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || ||||| || ||| | |||||| | || || |||||||| ||| |||| ||||| Sbjct 3685477 AATATGCAGATTTTTGTAAAAACACTGACTGGGAAAACCATCACCCTGGAGGTAGAAGCT 3685536 Query 21891 GCAGAAACGGTGGCCGATCTT--AAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAA 21948 |||| || | | || | | |||| || | || |||||||| || | ||| | Sbjct 3685537 TCAGACACCATAGA-GAACGTGAAAGCGAAGA-TTCAAGATAAAGAAGGAATTCCTCCAG 3685594 Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||| | | |||||||||||||| ||||| ||||| | ||| | | || | Sbjct 3685595 ACCAGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACT 3685654 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||| || |||||||| || || ||||| |||| | || | ||||||||| Sbjct 3685655 ACAACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3685707 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| | || || |||||||| ||| |||| || || | Sbjct 3685707 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3685766 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | || || ||| |||||||| || | ||| | |||| Sbjct 3685767 AGACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCA 3685826 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||||||||| ||||| |||||| | ||| | | || ||||| Sbjct 3685827 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3685886 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||| || || || ||||| |||| | || | ||||||||| Sbjct 3685887 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGA 3685935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | ||||| | || || |||||||| ||| |||| || || | Sbjct 3688180 AATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3688239 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | || || ||| |||||||| || | ||| | |||| Sbjct 3688240 AGACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCA 3688299 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||||||||||||||| ||||| | ||| | | || ||||| Sbjct 3688300 GCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGACGGGAGAACGCTCTCAGACTACAA 3688359 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || ||||| ||||| | ||| | ||||||||| | || || ||| Sbjct 3688360 CATCCAAAAGGAGTCTACATTGCATTTAGTATTACGTCTTCGGGGGGGA 3688408 >seq299 Length=124767 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||| | || |||||||| ||||| ||||||||| ||| | | ||||| Sbjct 103285 CAGCAAAGATTAATTTTTGCTGGAAAACAGCTAGAAGATGGTCGAACCCTTTCAGATTAT 103344 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| ||||||||| | ||| |||| |||||| ||||||| ||| Sbjct 103345 AATATTCAGAAAGAATCTACTTTGCATTTGGTCTTACGTCTACGAGGTGGA 103395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358106564509012