Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 1e-14 seq96 77.0 8e-11 >seq5 Length=1838298 Score = 89.7 bits (98), Expect = 1e-14 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || |||||||| ||| | || || || || | || | ||| || || ||| | Sbjct 1522032 TGCACCTTCCACAAATATGGTGCGTCCGGTACCGTGCAGAAATTCGACGGGCTGTGCGTG 1522091 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 |||||| ||| | |||||||||||||||||| | |||||||||||||||||| | | Sbjct 1522092 CTCCCGTTAAACATTGTCAACGAGAAGATCTACGTGTTCCTCTGGTTCTGGTTCATCATA 1522151 Query 3487 CTAGCCATCATCAGCGG 3503 || |||| | ||||| Sbjct 1522152 CTGTCCATACTGAGCGG 1522168 >seq96 Length=1494216 Score = 77.0 bits (84), Expect = 8e-11 Identities = 114/162 (70%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||||| |||| | || || || | | || | || | |||||| | Sbjct 731870 TGCACCTTCCACAAATTCGGTGCCTCCGGTACCATTCAGAAATTGGACGCCCTCTGCGTT 731811 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 ||| | |||| | |||||||||||||||| |||||||| |||||||||||| | Sbjct 731810 CTCGCTCTGAACATTCTCAACGAGAAGATCTATATTTTCCTGTGGTTCTGGTTCATTCTT 731751 Query 3487 CTAGCCATCATCAGCGGTATCGTTGTTCTGTACCGCATTGCT 3528 || || | | | ||| |||| | | |||||| |||| ||| Sbjct 731750 CTCGCGGTGTTGACCGGCATCGCTTTGCTGTACAGCATGGCT 731709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479429703000