Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq13 118 9e-22 seq28 109 5e-19 >seq13 Length=4112475 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| || || || || | ||| || || || || |||||||| || Sbjct 3685709 ATTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCT 3685650 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||||| ||||| || ||||| |||| | |||||| ||||| ||| Sbjct 3685649 GAGAGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 3685590 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| ||| | | || | |||||| | | ||| Sbjct 3685589 GGAATTCCTTCTTTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCT 3685530 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || ||||| |||||||||||||||||||| Sbjct 3685529 ACCTCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 3685480 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | || |||||||| | ||||| || ||||| |||||||| || Sbjct 3688410 ATTCCCCCCCGAAGACGTAATACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTCT 3688351 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||||| |||||||| ||||| |||| | |||||| ||||| ||| Sbjct 3688350 GAGAGCGTTCTCCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 3688291 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| ||| | | ||| | ||||| | | || Sbjct 3688290 GGAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCT 3688231 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||||||||| |||||||| Sbjct 3688230 ACCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3688181 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| || || || || | ||| || ||||| || |||||||| || Sbjct 3688182 ATTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCT 3688123 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | |||||| ||||| || ||||| |||| | |||||| ||||| ||| Sbjct 3688122 GAGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 3688063 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| ||| | | ||| | ||||| | | || Sbjct 3688062 GGAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCT 3688003 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||||||||| |||||||| Sbjct 3688002 ACCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687953 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| || || || || | ||| || ||||| || |||||||| || Sbjct 3685937 ATTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCT 3685878 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | |||||| ||||| || ||||| |||| | |||||| ||||| ||| Sbjct 3685877 GAGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 3685818 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || |||||| ||| | | ||| | ||||| | | || Sbjct 3685817 GGAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCT 3685758 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||||||||| || ||||| Sbjct 3685757 ACCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3685708 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| || || || || | ||| || ||||| || |||||||| || Sbjct 3687270 ATTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCT 3687211 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | |||||| ||||| || ||||| |||| | |||||| ||||| ||| Sbjct 3687210 GAGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 3687151 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || ||||||| || | | || | ||||| | | || Sbjct 3687150 GGAATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCT 3687091 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||||||||| || ||||| Sbjct 3687090 ACCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687041 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| || || || || | ||| || |||||||| |||||||| || Sbjct 3687498 ATTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCT 3687439 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||||| ||||| || ||||| |||| | |||||| ||||| ||| Sbjct 3687438 GAGAGCGTTCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 3687379 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || ||||| || | | || | ||||| | | ||| Sbjct 3687378 GGAATTCCTTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCT 3687319 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||||||||| |||||||| Sbjct 3687318 ACCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687269 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || |||| || || || || | ||| || ||||| || |||||||| || Sbjct 3687954 ATTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCT 3687895 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | |||||| ||||| || ||||| |||| | |||||| ||||| ||| Sbjct 3687894 GAGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 3687835 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| |||||||| || ||||||| || | | || | ||||| | | || Sbjct 3687834 GGAATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCT 3687775 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || || || ||||||||||| || ||||| Sbjct 3687774 ACCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 ||||| ||||| || ||||| |||| | |||||| ||||| ||||| || |||||||| Sbjct 3687651 TCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGCATTCCTTCTTTA 3687592 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| ||| | | ||| | ||||| | | || || |||| ||| | Sbjct 3687591 TCTTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATG 3687532 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || || || ||||||||||| |||||||| Sbjct 3687531 ATTTTCCCCGTGAGCGTTTTTACAAAGATCTGCAT 3687497 >seq28 Length=1782156 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||| | ||||||||| | || |||||||| |||||||| ||||| | || || Sbjct 1076452 AGTCGAAGAACTAAATGAAGAGTTGATTCTTTCTGAATGTTATAATCAGAAAGTGTGCGC 1076511 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||||||||| || ||||| |||| | | ||| || || || ||||| |||||| Sbjct 1076512 CCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGCGGAATTCCTTCT 1076571 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||| ||| ||||| | |||| ||||| | | ||| || |||| || Sbjct 1076572 TTGTCCTGAATTTTTGCTTTTACATTCTCAATAGTGTCCGATGCTTCAACTTCCAAAGTA 1076631 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| || || ||||| || || || || ||||| Sbjct 1076632 ATGGTTTTTCCTGTAAGAGTCTTGACGAAGATTTGCAT 1076669 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | |||| | || | ||| | || ||||| || ||||| || ||||| Sbjct 1077808 ATACCACCTCTCAGTCGGAGTACAAGATGAAGTGTTGATTCCTTCTGAATATTATAATCT 1077867 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| |||||||||||||||||| |||| | | ||| || || || Sbjct 1077868 GAAAGTGTGCGCCCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGT 1077927 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || ||| ||| |||| | |||| ||||||| | ||| Sbjct 1077928 GGGATTCCTTCCTTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCGGATGCTTCA 1077987 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||| || || ||||| || ||||| || ||||| Sbjct 1077988 ACTTCCAAGGTGATCGTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1078037 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || |||||||||||||| | || || ||||||||||||||||||| Sbjct 1078069 GTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCTTCAAGTTGTTTACCA 1078128 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | || ||||| || || || ||||| || || ||| ||| ||| Sbjct 1078129 GCGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTTTGCTTTG 1078188 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||| || | | || || || | ||| | ||||| || |||| || Sbjct 1078189 ACATTTTCAATGGTATCTGATGCCTCAACCTCAAGGGTTATTGTTTTACCAGTCAATGTC 1078248 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 1078249 TTAACAAAGATCTGCATG 1078266 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || |||||||||||||| | || || ||| ||||||||||||||| Sbjct 1076701 GTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCCTCAAGTTGTTTACCA 1076760 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | ||| || || || || || ||||| || || ||| || ||| Sbjct 1076761 GCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTGGCTTTG 1076820 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| | || |||||| |||| || | ||||| || || ||||| Sbjct 1076821 ACATTTTCAATAGTGTCAGAGGCTTCGACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTC 1076880 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 1076881 TTGACGAAGATTTGCAT 1076897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || ||||| || ||||| | || || ||| ||||||||||||||| Sbjct 1077613 GTAGATTCCTTCTGAATATTATAATCTGAAAGTGTGCGTCCATCCTCAAGTTGTTTACCA 1077672 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | || ||||| || || || ||||| || || ||| ||| ||| Sbjct 1077673 GCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTTTGCCTTT 1077732 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | || ||| || |||| || | ||||| || || ||||| Sbjct 1077733 ACATTCTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTC 1077792 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 1077793 TTAACAAAGATTTGCAT 1077809 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| ||||||||||||||||| | |||| || || |||||||||||| Sbjct 1076929 GTAGATTCCTTTTGAATGTTGTAATCAGAAAGTATACGCCCGTCCTCGAGTTGTTTACCA 1076988 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | ||| || || || || || ||||| || || ||| || ||| Sbjct 1076989 GCGAAAATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTTTG 1077048 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| || || | | ||| || |||| || | ||||| || || ||||| Sbjct 1077049 ACATTTTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATAGTTTTTCCTGTAAGAGTC 1077108 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||| ||||| Sbjct 1077109 TTAACGAAAATTTGCAT 1077125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420113007018936