Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq758 104 2e-17 seq355 93.3 3e-14 seq28 86.0 5e-12 seq2384 84.2 2e-11 >seq758 Length=6947 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1870 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1811 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 1810 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1780 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1870 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1811 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 1810 ATAACTGATATAATGAGCCTTTTGCGGTTTC 1780 >seq355 Length=1373 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/101 (82%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC---TGAGTAAGATCTAAGGA 115585 |||||||| ||||||||||||| || |||||||||||| || ||| |||||||| | Sbjct 630 CATGTATTAGCTCTAGAATTACTACAGTTATCCAAGTATAATGTGGGTACGATCTAAGAA 571 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||| ||||||| || ||||||||||| ||| || ||||| Sbjct 570 ACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 530 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/101 (82%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC---TGAGTAAGATCTAAGGA 114388 |||||||| ||||||||||||| || |||||||||||| || ||| |||||||| | Sbjct 630 CATGTATTAGCTCTAGAATTACTACAGTTATCCAAGTATAATGTGGGTACGATCTAAGAA 571 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||| ||||||| || ||||||||||| ||| || ||||| Sbjct 570 ACCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 530 >seq28 Length=1782156 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || || || | |||||| || || ||||||||||| ||||| | Sbjct 1076443 CCACCTCTAAGTCGAAGAACTAAATGAAGAGTTGATTCTTTCTGAATGTTATAATCAG-A 1076501 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| ||| | || || | |||||| || ||||| |||| | ||||||||| ||| Sbjct 1076502 AAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGCGG 1076561 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATTC 34076 | | ||||||||| | | ||||||||| | | || || || || | | ||| Sbjct 1076562 AATTCCTTCTTTGTCC-TGAATTTTTGCTT--TTACATTCTCAATAGTGTCCGATGCTTC 1076618 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || |||||||| || || || || || ||||||||||| Sbjct 1076619 AACTTCCAAAGTAATGGTTTTTCCTGTAAGAGTCTTGACGAAGATTTGCAT 1076669 >seq2384 Length=232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/101 (80%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC---TGAGTAAGATCTAAGGA 114388 |||||||| ||||||||| || ||| |||||||||||| || ||| |||||||| | Sbjct 100 CATGTATTAGCTCTAGAAGTATCACAGTTATCCAAGTATAATGTGGGTACGATCTAAGAA 159 Query 114389 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||| |||| || || ||||||||||| ||| | |||||| Sbjct 160 ACCATAACTTATTTAATGAGCCATTCGCGGTTTGATCTTAA 200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/101 (80%), Gaps = 5/101 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC---TGAGTAAGATCTAAGGA 115585 |||||||| ||||||||| || ||| |||||||||||| || ||| |||||||| | Sbjct 100 CATGTATTAGCTCTAGAAGTATCACAGTTATCCAAGTATAATGTGGGTACGATCTAAGAA 159 Query 115586 ACCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||| |||| || || ||||||||||| ||| | |||||| Sbjct 160 ACCATAACTTATTTAATGAGCCATTCGCGGTTTGATCTTAA 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397042181830756