Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq41 98.7 1e-15 seq116 96.9 4e-15 seq84 96.9 4e-15 seq28 96.9 4e-15 seq120 95.1 1e-14 >seq41 Length=2549405 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2038998 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2039057 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 2039058 TACTACCGAGGATT 2039071 >seq116 Length=2335868 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2186720 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2186661 Query 57067 TACTACCGAGGAT 57079 ||||||||||||| Sbjct 2186660 TACTACCGAGGAT 2186648 >seq84 Length=5494452 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 166318 AAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 166377 Query 57059 CACCACTATACTACCGAGGAT 57079 |||||||||||||||||||| Sbjct 166378 GACCACTATACTACCGAGGAT 166398 >seq28 Length=1782156 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||| ||||| | || || ||| | || || || || ||||||||||| Sbjct 1077847 TCCTTCTGAATATTATAATCTGAAAGTGTGCGCCCATCCTCAAGTTGTTTACCAGCGAAG 1077906 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||| || | ||| | | ||||| | | ||| |||||| || | | Sbjct 1077907 ATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTAT-CTTGAATTTTTGCCTTTACATT 1077965 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| | ||| || || | ||||| ||||| || || || ||||| || Sbjct 1077966 CTCAATAGTGTCGGATGCTTCAACTTCCAAGGTGATCGTTTTTCCTGTGAGAGTCTTAAC 1078025 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 1078026 AAAGATTTGCAT 1078037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||||| || || || |||| || || || ||||||||||| Sbjct 1077391 TCCTTCTGGATGTTGTAATCAGAAAGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAA 1077450 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||| |||| ||| | | ||||| | | ||| |||| | ||||| | Sbjct 1077451 ATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 1077509 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || | ||| || || | ||||||||||| || || || ||||| || Sbjct 1077510 TTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTAAC 1077569 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 1077570 GAAGATTTGCAT 1077581 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||| ||||| | || || || | || || || || ||||||||||| Sbjct 1077619 TCCTTCTGAATATTATAATCTGAAAGTGTGCGTCCATCCTCAAGTTGTTTACCAGCGAAG 1077678 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||||| | ||| | | ||||| | | ||| |||||| || | | Sbjct 1077679 ATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTAT-CTTGAATTTTTGCCTTTACATT 1077737 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | ||| || || | ||||||||||| || || || ||||| || Sbjct 1077738 CTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAAC 1077797 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 1077798 AAAGATTTGCAT 1077809 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| |||||||| | || || ||| | || || || || ||||||||||| Sbjct 1076707 TCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCCTCAAGTTGTTTACCAGCGAAG 1076766 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||| || | || | | ||||| | | ||| |||| | ||||| | Sbjct 1076767 ATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTAT-CTTGAATTTTGGCTTTGACATT 1076825 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| | ||| || || | ||||||||||| || || || ||||| || Sbjct 1076826 TTCAATAGTGTCAGAGGCTTCGACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTGAC 1076885 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 1076886 GAAGATTTGCAT 1076897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| |||||||||| || | ||| |||| || || || ||||||||||| Sbjct 1076935 TCCTTTTGAATGTTGTAATCAGAAAGTATACGCCCGTCCTCGAGTTGTTTACCAGCGAAA 1076994 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||| || | ||| | | ||||| | | ||| |||| | ||||| | Sbjct 1076995 ATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 1077053 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || | ||| || || | ||||| ||||| || || || ||||| || Sbjct 1077054 TTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATAGTTTTTCCTGTAAGAGTCTTAAC 1077113 Query 42197 AAAGATTTGCAT 42208 || |||||||| Sbjct 1077114 GAAAATTTGCAT 1077125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||||| || || || |||| || || || ||||||||||| Sbjct 1077163 TCCTTCTGGATGTTGTAATCAGAAAGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAA 1077222 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||| |||| ||| | | ||||| | | ||| |||| | ||||| | Sbjct 1077223 ATCAATCTCTGCTGATCGGGTGGGATTCCTTCCTTAT-CTTGAATTTTAGCTTTGACATT 1077281 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || || | ||| || || | ||||||||||| || || || ||||| || Sbjct 1077282 TTCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTGAC 1077341 Query 42197 AAAGATTTGCAT 42208 || |||||||| Sbjct 1077342 GAAAATTTGCAT 1077353 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || ||||| || ||||||| || || ||| | || || || ||||| ||||| || Sbjct 1076479 TCTTTCTGAATGTTATAATCAGAAAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAG 1076538 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||| || | || | | || |||||| ||| |||||| ||| | | Sbjct 1076539 ATCAATCTCTGCTGATCTGGCGGAATTCCTTCTTTGTCC-TGAATTTTTGCTTTTACATT 1076597 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | ||| || || | || |||||||| || || || ||||| || Sbjct 1076598 CTCAATAGTGTCCGATGCTTCAACTTCCAAAGTAATGGTTTTTCCTGTAAGAGTCTTGAC 1076657 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 1076658 GAAGATTTGCAT 1076669 >seq120 Length=4136026 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 3255226 AAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 3255285 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 3255286 CTGACCACTATACTACCGAGGA 3255307 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | | |||||||| ||||||||||||||||||||| ||||| ||| Sbjct 3263957 TTTCTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCG 3263898 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 3263897 CTATACTATCGAGGA 3263883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543184430711520