Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13 116 4e-21 seq28 93.3 4e-14 >seq13 Length=4112475 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || |||||||| | | ||||||||||| ||||||||||| Sbjct 3688407 CCCCCCCGAAGACGTAATACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTCTGAG 3688348 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | ||| || |||||||| || | | |||| | |||||| ||||| ||||| Sbjct 3688347 AGCGTTCTCCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3688288 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| | || | ||| | | ||| | ||||| | | ||| || Sbjct 3688287 ATTCCTTCTTTATCC-TGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTAC 3688229 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || || ||||||||||| |||||||| Sbjct 3688228 CTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3688181 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || || || | | |||||||| || ||||||||||| Sbjct 3685706 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAG 3685647 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | ||| || ||||| || || | | |||| | |||||| ||||| ||||| Sbjct 3685646 AGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3685587 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| | || | ||| | | || | |||||| | | || || Sbjct 3685586 ATTCCTTCTTTATCT-TGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTAC 3685528 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| |||||||| |||||||||||||||||||| Sbjct 3685527 CTCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 3685480 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || | | ||| || ||||| || || | | Sbjct 3687690 GACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCA 3687631 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | |||||| ||||| ||||| || |||||||| || ||| | || | ||| | Sbjct 3687630 AAGATCAAACGCTGCTGGTCTGGAGGCATTCCTTCTTTATCT-TGAATCTTCGCTTTCAC 3687572 Query 138541 -TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||| | | ||| ||||| | || | |||| || || || ||||| Sbjct 3687571 GTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGATTTTCCCCGTGAGCGTTTT 3687512 Query 138600 TACAAAAATCTGCAT 138614 |||||| |||||||| Sbjct 3687511 TACAAAGATCTGCAT 3687497 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || || || | | ||||| || || ||||||||||| Sbjct 3688179 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3688120 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | || || ||||| || || | | |||| | |||||| ||||| ||||| Sbjct 3688119 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3688060 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| | || | ||| | | ||| | ||||| | | ||| || Sbjct 3688059 ATTCCTTCTTTATCC-TGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTAC 3688001 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || || ||||||||||| |||||||| Sbjct 3688000 CTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687953 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || || || | | ||||| ||||| ||||||||||| Sbjct 3687495 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTGAG 3687436 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | ||| |||||||| || || | | |||| | |||||| ||||| ||||| Sbjct 3687435 AGCGTTCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3687376 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || || || || | | || | ||||| | | || ||| Sbjct 3687375 ATTCCTTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTACC 3687316 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || || ||||||||||| |||||||| Sbjct 3687315 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || || || | | ||||| || || ||||||||||| Sbjct 3685934 CCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3685875 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | | || || ||||| || || | | |||| | |||||| ||||| ||||| Sbjct 3685874 AGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3685815 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| | || | ||| | | ||| | ||||| | | ||| || Sbjct 3685814 ATTCCTTCTTTATCC-TGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTAC 3685756 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || || || ||||||||||| || ||||| Sbjct 3685755 CTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3685708 >seq28 Length=1782156 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| ||||||||||| || | || ||| || || ||||||||||| | Sbjct 1078070 TTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCTTCAAGTTGTTTACCAG 1078129 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 |||||| | || ||||| || || || ||||| || || ||| |||||| ||| Sbjct 1078130 CGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATC-TTGAATTTTTGCTTTG 1078188 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | ||| | ||| || | | ||| ||||| | || | ||||||||||||| || Sbjct 1078189 ACATTTTCAATGGTATCTGATGCCTCAACCTCAAGGGTTATTGTTTTACCAGTCAATGTC 1078248 Query 138598 TTTACAAAAATCTGCATG 138615 || ||||| ||||||||| Sbjct 1078249 TTAACAAAGATCTGCATG 1078266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496236482696160