Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq413 109 5e-19 seq13 105 6e-18 seq299 96.9 3e-15 >seq413 Length=693780 Score = 109 bits (120), Expect = 5e-19 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 126910 ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTG 126969 |||||| || || ||||||| |||||||||||| | ||||| ||| |||| || Sbjct 292402 ATGTAT--TATAC-CTTTTTGGATATTGTAATCGGAGAGGGTGCGTCCATCTTCTAATTG 292346 Query 126970 TTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 ||| |||||| | || | ||| |||||||| ||||| || || ||||||||| ||| || Sbjct 292345 TTTCCCAGCGAAAATAAGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTT 292286 Query 127030 CTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 ||| | | ||| | ||||| | | || || || | ||| | ||||| || || Sbjct 292285 TGCCTTCACATTTTCAATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGT 292226 Query 127090 CAGAGTTTTTACAAAAATCTGCA---TGGCTTATTTATTC 127126 || |||||||| || ||||||| |||||||| || || Sbjct 292225 GAGGGTTTTTACGAATATCTGCATCGTGGCTTATCTAATC 292186 >seq13 Length=4112475 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | ||||| |||||| || | ||| |||||||| || || ||||| || Sbjct 3688180 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGA 3688121 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| | ||| || || || || ||||| ||||||| |||||||| || ||||| Sbjct 3688120 GAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3688061 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| || ||| || | | ||| | ||||| | | ||| || Sbjct 3688060 AATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTAC 3688001 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || ||||||||||| |||||||| Sbjct 3688000 CTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687953 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | ||||| |||||| || | ||| |||||||| || || ||||| || Sbjct 3685935 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGA 3685876 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| | ||| || || || || ||||| ||||||| |||||||| || ||||| Sbjct 3685875 GAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3685816 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| || ||| || | | ||| | ||||| | | ||| || Sbjct 3685815 AATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTAC 3685756 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || ||||||||||| || ||||| Sbjct 3685755 CTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3685708 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | ||||| |||||| || | ||| ||||||||||| || ||||| || Sbjct 3687496 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTGA 3687437 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| | || || || || || ||||| ||||||| |||||||| || ||||| Sbjct 3687436 GAGCGTTCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3687377 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || || || ||| ||| | | || | ||||| | | || || Sbjct 3687376 AATTCCTTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTAC 3687317 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || ||||||||||| |||||||| Sbjct 3687316 CTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687269 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || || || ||||| | |||||||| ||||| || ||||| || Sbjct 3688408 TCCCCCCCGAAGACGTAATACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTCTGA 3688349 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| | || || || ||||| ||||| ||||||| |||||||| || ||||| Sbjct 3688348 GAGCGTTCTCCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3688289 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| || ||| || | | ||| | ||||| | | ||| || Sbjct 3688288 AATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTAC 3688229 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || || || ||||||||||| |||||||| Sbjct 3688228 CTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3688181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | ||||| |||||| || | ||| |||||||| || || ||||| || Sbjct 3687268 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGA 3687209 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| | ||| || || || || ||||| ||||||| |||||||| || ||||| Sbjct 3687208 GAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3687149 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || || ||| | | ||| || | | || | ||||| | | ||| | Sbjct 3687148 AATTCCTTCTTTATCT-TGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTA 3687090 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | ||||| || || || ||||||||||| || ||||| Sbjct 3687089 CCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | ||||| |||||| || | ||| |||||||| || || ||||| || Sbjct 3687952 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGA 3687893 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| | ||| || || || || ||||| ||||||| |||||||| || ||||| Sbjct 3687892 GAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3687833 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || || ||| | | ||| || | | || | ||||| | | ||| | Sbjct 3687832 AATTCCTTCTTTATCT-TGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTA 3687774 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | ||||| || || || ||||||||||| || ||||| Sbjct 3687773 CCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | ||||| |||||| || | ||| ||||| || || || ||||| || Sbjct 3685707 TCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGA 3685648 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | || || || || || ||||| ||||||| |||||||| || ||||| Sbjct 3685647 GAGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 3685588 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || || || ||| || | | || | |||||| | | || || Sbjct 3685587 AATTCCTTCTTTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTAC 3685528 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || ||||| |||||||||||||||||||| Sbjct 3685527 CTCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 3685480 >seq299 Length=124767 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 |||||||| |||| || || |||||||| | ||||| ||||| |||||||| ||||| Sbjct 103397 GCTCCACCTCGTAGACGTAAGACCAAATGCAAAGTAGATTCTTTCTGAATATTATAATCT 103338 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || ||| ||| ||||||||||||||||| | || |||| |||||||| || Sbjct 103337 GAAAGGGTTCGACCATCTTCTAGCTGTTTTCCAGCAAAAATTAATCTTTGCTGATCTGGT 103278 Query 127004 GGTATGCC 127011 || ||||| Sbjct 103277 GGAATGCC 103270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475475966970720