Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq13 161 2e-34 seq413 100 7e-16 seq28 100 7e-16 >seq13 Length=4112475 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| ||| || | ||| || || ||||| || |||| ||||||||| | | || Sbjct 3685929 TCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGT 3685870 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||||||||| ||||| || || ||||| | |||||||||||| ||| |||||| Sbjct 3685869 TCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCC 3685810 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||||||||| |||||| ||| | ||||||| | ||||| |||| Sbjct 3685809 TTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAG 3685750 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| ||||| Sbjct 3685749 GGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTG 3685711 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| ||| || | ||| || || ||||| || |||| ||||||||| | | || Sbjct 3687262 TCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGT 3687203 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||||||||| ||||| || || ||||| | |||||||||||| ||| |||||| Sbjct 3687202 TCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCC 3687143 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || ||||||||| |||||| || | ||||||| | ||||| ||||| Sbjct 3687142 TTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAA 3687083 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| ||||| Sbjct 3687082 GGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTG 3687044 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| ||| || | ||| || || ||||| || |||| ||||||||| | | || Sbjct 3687946 TCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGT 3687887 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||||||||| ||||| || || ||||| | |||||||||||| ||| |||||| Sbjct 3687886 TCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCC 3687827 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || ||||||||| |||||| || | ||||||| | ||||| ||||| Sbjct 3687826 TTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAA 3687767 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| ||||| Sbjct 3687766 GGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTG 3687728 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| ||| || | ||| || || |||||||| |||| ||||||||| | | || Sbjct 3685701 TCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGT 3685642 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || |||||||| ||||| || || ||||| | |||||||||||| ||| |||||| Sbjct 3685641 TCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCC 3685582 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| |||||| || | |||||||| | |||||| |||| Sbjct 3685581 TTCTTTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTACCTCCAG 3685522 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||| |||||||| || Sbjct 3685521 GGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTG 3685483 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| ||| || | ||| || || ||||| || |||| ||||||||| | | || Sbjct 3688174 TCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGT 3688115 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||||||||| ||||| || || ||||| | |||||||||||| ||| |||||| Sbjct 3688114 TCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCC 3688055 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||||||||| |||||| ||| | ||||||| | ||||| |||| Sbjct 3688054 TTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAG 3687995 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| || || Sbjct 3687994 GGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTG 3687956 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| ||| || | ||| || || ||||| ||||||| ||||||||| | | || Sbjct 3687490 TCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGCGT 3687431 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || ||||| || ||||| || || ||||| | |||||||||||| ||| |||||| Sbjct 3687430 TCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCC 3687371 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || || ||||| ||||||| || | ||||||| | |||||| |||| Sbjct 3687370 TTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTACCTCCAG 3687311 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| ||||| ||||| || || Sbjct 3687310 GGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTG 3687272 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| || || | ||| || || |||||||| |||| ||||||||| | | || Sbjct 3687718 TCGAAGTCGAAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGT 3687659 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || |||||||| ||||| || || ||||| | |||||||||||| ||| ||||| Sbjct 3687658 TCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGCATTCC 3687599 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || |||||||| |||||| ||| | ||||||| | ||||| |||| Sbjct 3687598 TTCTTTATCTTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAG 3687539 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| | || |||||||| ||||| ||||| || || Sbjct 3687538 GGTGATGATTTTCCCCGTGAGCGTTTTTACAAAGATCTG 3687500 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||||||||||| ||||||||| | | || || || |||||||| || || || Sbjct 3688377 GTAGACTCCTTTTGGATGTTGTAGTCTGAGAGCGTTCTCCCGTCTTCCAGTTGTTTGCCA 3688318 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | |||||||||||| ||| |||||||||| ||||||||||| ||| Sbjct 3688317 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGAATCTTCGCTTTC 3688258 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| | ||||||| | ||||| |||| ||||| || || || ||||| ||| Sbjct 3688257 ACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGTTTTCCCTGTGAGCGTT 3688198 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 3688197 TTTACAAAGATCTG 3688184 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| || || | ||| || || |||||||| |||| ||||||||| | | || Sbjct 3687034 TCGAAGTCGAAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGT 3686975 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || || |||||||| ||||| || || ||||| | |||||||||||| ||| |||||| Sbjct 3686974 TCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCC 3686915 Query 199528 TTCT 199531 |||| Sbjct 3686914 TTCT 3686911 >seq413 Length=693780 Score = 100 bits (110), Expect = 7e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||||| ||||| || | | || | ||||||||| | || || || ||||| || Sbjct 292389 TTTTGGATATTGTAATCGGAGAGGGTGCGTCCATCTTCTAATTGTTTCCCAGCGAAAATA 292330 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 || || ||||| || ||| ||||||||| ||||| |||||| |||||| ||| Sbjct 292329 AGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCA 292270 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | ||||||| | |||||| || | || || || ||||||||||| ||||| || || Sbjct 292269 ATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAT 292210 Query 199622 ATTTG 199626 || || Sbjct 292209 ATCTG 292205 >seq28 Length=1782156 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| || |||||||||||||| || ||||| || | || || || | | || | | Sbjct 1077592 AGTCGAAGTACAAGGTGGAGAGTAGATTCCTTCTGAATATTATAATCTGAAAGTGTGCGT 1077651 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| || || || || || |||||||| | | |||||||| || |||||||| Sbjct 1077652 CCATCCTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCTTCC 1077711 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || ||||| ||| ||| || || | ||||| | | ||| || ||||| ||| Sbjct 1077712 TTATCTTGAATTTTTGCCTTTACATTCTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTG 1077771 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| || ||||| ||||| Sbjct 1077772 ATGGTTTTTCCTGTGAGAGTCTTAACAAAGATTTG 1077806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178858491589926