Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq413 91.5 1e-13 seq28 91.5 1e-13 >seq413 Length=693780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||| ||||| ||||||| | |||| |||| || ||||||||||| | |||| Sbjct 292391 CTTTTTGGATATTGTAATCGGAGAGGGTGCGTCCATCTTCTAATTGTTTCCCAGCGAAAA 292332 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | || |||||||| | || | ||||| ||||| || ||| || | | Sbjct 292331 TAAGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTT 292272 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 | | ||||||| ||| || || | ||||| ||||||||||| | |||||||||| Sbjct 292271 CAATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGA 292212 Query 39710 AGATCTGCAT 39719 | |||||||| Sbjct 292211 ATATCTGCAT 292202 >seq28 Length=1782156 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || || ||||| | ||| |||||| || || |||||||| | | ||| || Sbjct 1076455 CGAAGAACTAAATGAAGAGTTGATTCTTTCTGAATGTTATAATCAGAAAGTGTGCGCCCA 1076514 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||| || || |||| || || | ||||||||| | || | ||||||||| Sbjct 1076515 TCTTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGCGGAATTCCTTCTTTG 1076574 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || |||||| ||| | || | | ||||| | ||| || ||||||||||| Sbjct 1076575 TCCTGAATTTTTGCTTTTACATTCTCAATAGTGTCCGATGCTTCAACTTCCAAAGTAATG 1076634 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | ||| || |||||||| ||||| Sbjct 1076635 GTTTTTCCTGTAAGAGTCTTGACGAAGATTTGCAT 1076669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347351912157074