Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13 136 4e-27 seq413 114 1e-20 seq136 109 5e-19 seq28 98.7 1e-15 >seq13 Length=4112475 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || |||||||||||||| || |||||||||||| | || || ||||| | Sbjct 3685707 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3685766 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| || || | || ||||| |||||||| | |||| Sbjct 3685767 AGACACAATAGAAAACG-TGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACC 3685825 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||| || ||||| || | | | || ||| ||||||| Sbjct 3685826 AGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACA 3685885 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| || || | ||||| || ||||||||||| Sbjct 3685886 ACATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCG 3685922 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||||||||||||||| |||| ||||||| | || || ||||| | Sbjct 3687496 AATGCAGATCTTTGTAAAAACGCTCACGGGGAAAATCATCACCCTGGAGGTAGAGGCTTC 3687555 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| || || | || ||||| ||||| || | |||| Sbjct 3687556 AGACACAATAGAAAACG-TGAAAGCGAAGATTCAAGATAAAGAAGGAATGCCTCCAGACC 3687614 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||| || ||||| |||| | | |||||| ||||||| Sbjct 3687615 AGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACTACA 3687674 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| | ||||| || |||||||| || Sbjct 3687675 ACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTTCG 3687711 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || |||||||||||||| || |||||||||||| | || || ||||| | Sbjct 3688180 AATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3688239 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| || || | || ||||| |||||||| | |||| Sbjct 3688240 AGACACAATAGAAAACG-TGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACC 3688298 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || |||||||| ||||| |||| | | || ||| ||||||| Sbjct 3688299 AGCAGCGTTTGATCTTTGCTGGCAAACAACTGGAAGACGGGAGAACGCTCTCAGACTACA 3688358 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||||||||| | || ||||||| || Sbjct 3688359 ACATCCAAAAGGAGTCTACATTGCATTTAGT 3688389 Score = 132 bits (146), Expect = 5e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || |||||||| || || || |||||||||||| | || || || || Sbjct 3685476 AAATATGCAGATTTTTGTAAAAACACTGACTGGGAAAACCATCACCCTGGAGGTAGAAGC 3685535 Query 38300 CACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||| | | | |||| | |||| || || | || ||||| |||||||| | | Sbjct 3685536 TTCAGACACCATAGAGAACG-TGAAAGCGAAGATTCAAGATAAAGAAGGAATTCCTCCAG 3685594 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| | || | || ||||| || ||||| |||| | | |||||| |||| Sbjct 3685595 ACCAGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGACGGGAGAACCCTCTCAGACT 3685654 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| ||||| | ||||| || ||||||||||| Sbjct 3685655 ACAACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTGCG 3685694 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || |||||||||||||| || |||||||||||| | || || ||||| | Sbjct 3687952 AATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTC 3688011 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| | |||| || || | || ||||| |||||||| | |||| Sbjct 3688012 AGACACAATAGAAAACG-TGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACC 3688070 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||| || ||||| || | | | || ||| ||||||| Sbjct 3688071 AGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACA 3688130 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| || || | ||||| || ||||||||||| Sbjct 3688131 ACATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCG 3688167 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || |||||||||||||| || |||||||||||| | || || ||||| | Sbjct 3687040 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687099 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | || | ||| || | || ||||| |||||||| | ||||| Sbjct 3687100 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687159 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| || ||||| || | | | || ||| |||||||| Sbjct 3687160 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687219 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | ||||| || ||||||||||| Sbjct 3687220 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCG 3687255 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || |||||||||||||| || |||||||||||| | || || ||||| | Sbjct 3687724 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687783 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | || | ||| || | || ||||| |||||||| | ||||| Sbjct 3687784 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687843 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || ||||| || ||||| || | | | || ||| |||||||| Sbjct 3687844 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687903 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || || | ||||| || ||||||||||| Sbjct 3687904 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCG 3687939 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || |||||||||||||| || |||||||||||| | || || || || | Sbjct 3687268 AATGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAAGCTTC 3687327 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || || | || ||||| |||||||| | |||| Sbjct 3687328 AGACACAATAGAGAACG-TGAAGGCGAAGATACAAGATAAAGAAGGAATTCCTCCAGACC 3687386 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||| || || || |||| | | || ||| ||||||| Sbjct 3687387 AGCAGCGTTTGATCTTTGCTGGCAAGCAACTCGAAGACGGGAGAACGCTCTCAGACTACA 3687446 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| || | ||||| || ||||||||||| Sbjct 3687447 ACATCCAAAAAGAGTCCACGCTTCACTTGGTGCTGCG 3687483 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 || ||||| |||||||| | ||||| ||||| | || | || ||||| || ||||| Sbjct 3686906 GATAAAGAAGGAATTCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAA 3686965 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| | | |||||| |||||||||||||| ||||| | ||||| || |||||||| Sbjct 3686966 GACGGGAGAACCCTCTCAGACTACAACATCCAGAAGGAGTCCACGCTTCACTTGGTGCTT 3687025 Query 38457 CG 38458 || Sbjct 3687026 CG 3687027 >seq413 Length=693780 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||||||||| |||||||| |||||||| ||| | || || || || | Sbjct 292202 ATGCAGATATTCGTAAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTAGAAGCTTCA 292261 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||| |||| ||||| || |||||||| | || || Sbjct 292262 GACACTATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 292321 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| || ||||| | || || | ||||||||| ||| ||||| Sbjct 292322 CAACGACTTATTTTCGCTGGGAAACAATTAGAAGATGGACGCACCCTCTCCGATTACAAT 292381 Query 38424 ATCCAAAA 38431 |||||||| Sbjct 292382 ATCCAAAA 292389 >seq136 Length=558006 Score = 109 bits (120), Expect = 5e-19 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| |||||||| || ||||| |||||||| || | ||| |||||||| || | ||| | Sbjct 338232 CCTCATCCCTGGAGATCAGTTCATTGCTGAATGTAAGGCCAGGCATGAGACCCCTTTTCT 338173 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | |||||| |||||||||||||| || ||||||| ||| || ||||| || || | Sbjct 338172 TCAACCAAAAAATGGCGGCGAAACTACCACTGAAGAAGATGCCTTCCACGGCAGCAAATG 338113 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | | | || || ||| ||||| |||| | ||||| ||| ||||| | || Sbjct 338112 CGATTACCCGTTCAGGGAAAGTGGCGGTTTTGTGGTTTATCCAATTCAGTGCCCAGTTGG 338053 Query 133097 CCTTTTCTTTG--ACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 | |||||| | ||||| || | | || || ||||| || ||| Sbjct 338052 C--TTTCTTAGCAACGCATGGTAGATTCTCAATCGCGTTAAATAAA 338009 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 ||||||||||| || || || || |||||||| | ||| || || |||||||| || ||| Sbjct 337807 GAATACATTTCTGAATGCACATTTTCCATGGCAACTTGGAAACCATAAAAGCAACGTGCC 337748 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || | |||||||| ||| ||| || ||||| ||||| || ||||| || || ||| Sbjct 337747 TCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAGATTCTCATTGACAATTCCATCG 337688 Query 133306 CTGGCGGCGAAAAAGGCCA 133324 ||| || || || |||| Sbjct 337687 GAGGCTGCAAAGAATGCCA 337669 >seq28 Length=1782156 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||||||||| | || ||||| ||| | Sbjct 1076897 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTCGAAGCCTCT 1076838 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| ||||| | || || || ||||| ||| | || || Sbjct 1076837 GACACTATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAG 1076778 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | ||| || ||||| || || || | |||||| || || |||||| Sbjct 1076777 CAGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCAGATTACAAC 1076718 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| | || || || | || || || ||||||| || Sbjct 1076717 ATTCAGAAGGAATCAACACTTCACCTTGTACTTCGACTGAGAGGTGG 1076671 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||||||||| | || || || || | Sbjct 1077353 ATGCAAATTTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCA 1077294 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||| | || || || ||||| || |||| || Sbjct 1077293 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAG 1077234 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| ||| || ||||| || || |||| || || || || |||||| Sbjct 1077233 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAAC 1077174 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || || | || || || ||||| || || Sbjct 1077173 ATCCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGGGGTGG 1077127 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||||||||| | || || || || | Sbjct 1077581 ATGCAAATCTTCGTTAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCA 1077522 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||| | || || || ||||| || |||| || Sbjct 1077521 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAG 1077462 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| ||| || ||||| || || |||| || || || || |||||| Sbjct 1077461 CAGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAAC 1077402 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || || | || || || ||||| || || Sbjct 1077401 ATCCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGGGGTGG 1077355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500146678475520