Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 116 2e-21 seq28 107 1e-18 seq299 84.2 1e-11 >seq13 Length=4112475 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| ||| | || ||| Sbjct 3687705 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTCCCGTCTTCC 3687646 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || | || ||||||||| | |||| || || || || | Sbjct 3687645 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGCATTCCTTCTTTATCTTGA 3687586 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| ||| ||| | |||| | || ||||| || || | ||| ||| |||| Sbjct 3687585 ATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGATTTTC 3687526 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || || |||||||||||||| Sbjct 3687525 CCCGTGAGCGTTTTTACAAAGATCTGCAT 3687497 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| |||||||| ||||| ||||| || || ||| |||| ||| Sbjct 3688161 ACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTCCCATCTTCC 3688102 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || | || ||||||||| | || | || || || || | Sbjct 3688101 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGA 3688042 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| ||| ||| | |||| | || ||||| || || | ||| |||||||| Sbjct 3688041 ATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGTTTTC 3687982 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || || |||||||||||||| Sbjct 3687981 CCTGTGAGCGTTTTTACAAAGATCTGCAT 3687953 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| ||| | || ||| Sbjct 3685688 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTCCCGTCTTCC 3685629 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || | || ||||||||| | || | || || || || | Sbjct 3685628 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGA 3685569 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| ||| ||| |||| | || || || || || | ||| |||||||| Sbjct 3685568 ATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTACCTCCAGGGTGATGGTTTTC 3685509 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACTTGT 34995 || || || || || ||||| ||||||||||| | || |||| Sbjct 3685508 CCAGTCAGTGTTTTTACAAAAATCTGCATATTTGATGAGTTGT 3685466 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || || ||||| ||||| || || ||| | || ||||| ||||| || ||||| Sbjct 3688371 TCCTTTTGGATGTTGTAGTCTGAGAGCGTTCTCCCGTCTTCCAGTTGTTTGCCAGCAAAG 3688312 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | || || || || ||||||| ||| ||| | Sbjct 3688311 ATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTT 3688252 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | || ||||| || || | ||| |||||||| || ||||| || || ||| Sbjct 3688251 TCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACA 3688192 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 3688191 AAGATCTGCAT 3688181 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||||| || ||||| ||||| || || ||| | || || Sbjct 3687477 ACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGCGTTCTCCCGTCTTCG 3687418 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || || ||||| || | || ||||||||| | || | || || || || Sbjct 3687417 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCTTGT 3687358 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| |||| | || || || || || | ||| |||||||| Sbjct 3687357 ATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTACCTCCAGGGTGATGGTTTTC 3687298 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || || |||||||||||||| Sbjct 3687297 CCTGTGAGCGTTTTTACAAAGATCTGCAT 3687269 >seq28 Length=1782156 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| ||||| || ||||| | ||| |||| || || ||||| || || || Sbjct 1077618 TTCCTTCTGAATATTATAATCTGAAAGTGTGCGTCCATCCTCAAGTTGTTTACCAGCGAA 1077677 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||||||| | || | || ||||| || ||| || || || | Sbjct 1077678 GATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTTTGCCTTTAC--A 1077735 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | ||| ||| ||||| || | || ||||||||||| ||||||||||| Sbjct 1077736 TTCTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTA 1077795 Query 34968 ACAAAGATCTGCATA 34982 |||||||| |||||| Sbjct 1077796 ACAAAGATTTGCATA 1077810 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||||||||| || || ||||| | || |||| || || || Sbjct 1078062 GTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCTTCAAGTTG 1078121 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| || || || |||| || |||||||||| | || | || ||||| || ||| || Sbjct 1078122 TTTACCAGCGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTT 1078181 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 |||||| | | || | || |||||||| || | |||||| ||||| || || Sbjct 1078182 TGCTTTGACATTTTCAATGGTATCTGATGCCTCAACCTCAAGGGTTATTGTTTTACCAGT 1078241 Query 34958 GAGAGTCTTCACAAAGATCTGCATATT 34984 | ||||| |||||||||||||| || Sbjct 1078242 CAATGTCTTAACAAAGATCTGCATGTT 1078268 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| || |||| || |||||||||||||||||| || ||||| | || |||| || Sbjct 1076460 AACTAAATGAAGAGTTGATTCTTTCTGAATGTTATAATCAGAAAGTGTGCGCCCATCTTC 1076519 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||| ||||| || | || ||||| ||| |||| | || || ||||| Sbjct 1076520 AAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGCGGAATTCCTTCTTTGTCCTG 1076579 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || ||| || || || || | || || ||||| || | || |||||| Sbjct 1076580 AATTTTTGCTTTTAC--ATTCTCAATAGTGTCCGATGCTTCAACTTCCAAAGTAATGGTT 1076637 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || |||||||| || ||||| |||||| Sbjct 1076638 TTTCCTGTAAGAGTCTTGACGAAGATTTGCATA 1076670 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||| ||||||||||| || || ||||| | || |||| || || || Sbjct 1076694 GTGAAGTGTTGATTCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATCCTCAAGTTG 1076753 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| || || || || | || ||||| ||| | || | || ||||| || ||| || Sbjct 1076754 TTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTT 1076813 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 |||||| | | || | ||| ||| || || || | || ||||||||||| || Sbjct 1076814 GGCTTTGACATTTTCAATAGTGTCAGAGGCTTCGACTTCCAAAGTGATGGTTTTTCCTGT 1076873 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 |||||||| || ||||| |||||| Sbjct 1076874 AAGAGTCTTGACGAAGATTTGCATA 1076898 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| |||| ||| ||| |||||||| ||||| || ||||| | || |||| || | Sbjct 1077830 CAAGATGAAGTGTTGATTCCTTCTGAATATTATAATCTGAAAGTGTGCGCCCATCCTCAA 1077889 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 | ||||| || || || || | || ||||| ||| | || | || ||||| || || Sbjct 1077890 GTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAA 1077949 Query 34894 TCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 | || || || || || || | || || ||||| || | ||| || ||||| Sbjct 1077950 TTTTTGCCTTTAC--ATTCTCAATAGTGTCGGATGCTTCAACTTCCAAGGTGATCGTTTT 1078007 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| ||||||||||| |||||||| |||||| Sbjct 1078008 TCCTGTGAGAGTCTTAACAAAGATTTGCATA 1078038 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | | || | ||||| || ||| ||||| ||||| || || ||| Sbjct 1077355 CCACCCCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 1077414 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | ||| | || || || ||||| || || || || | || ||||| || | || Sbjct 1077415 AGTGTACGTCCGTCCTCGAGTTGTTTACCAGCGAAAATCAATCTCTGCTGATCGGGTGGG 1077474 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||| || |||||| | | || | || || ||||| Sbjct 1077475 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTTTCAATAGTATCTGAAGCTTCAACT 1077534 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||||||||| || |||||||| || ||||| |||||| Sbjct 1077535 TCCAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACGAAGATTTGCATA 1077582 >seq299 Length=124767 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| ||||| || |||||| |||| |||| || ||||||||||| ||||| Sbjct 103359 TTCTTTCTGAATATTATAATCTGAAAGGGTTCGACCATCTTCTAGCTGTTTTCCAGCAAA 103300 Query 34850 TATTAGTCGTTGCTGGTCT 34868 |||| || |||||| ||| Sbjct 103299 AATTAATCTTTGCTGATCT 103281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324617069859984