Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq111 149 7e-31 seq136 113 5e-20 >seq111 Length=5712365 Score = 149 bits (164), Expect = 7e-31 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 47279 CCAAAGTTTTCGTTCAGTTAATGTTTTTAAAAGATGAGGATTAACAATTTGAAATTCTCC 47338 ||| || | || ||||||||| | |||| | ||||||||| || | |||||||||||| Sbjct 1431 CCAGAGATCTCTTTCAGTTAAATCTCTTAACAAATGAGGATTCACGACTTGAAATTCTCC 1490 Query 47339 AGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCC 47398 ||| ||||||| | |||| || ||||| ||||||||||| | ||| ||||||||||| Sbjct 1491 AGACAGTACTCGCCTTGTATAGATGTTACTCGTATATGGTTCAACAGACTCATTATTTCC 1550 Query 47399 AAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCC 47458 ||||| || || || || ||||| ||||| | ||||| ||| || |||||| ||||| Sbjct 1551 TAAAATCTGTGCGGTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCC 1610 Query 47459 ATATTTT 47465 | |||| Sbjct 1611 GTGTTTT 1617 Score = 141 bits (156), Expect = 1e-28 Identities = 219/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 ||| || ||||| |||| || || | ||| || | ||||| ||||||||||| ||||| Sbjct 2816 ATTACCTGTATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAA 2875 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 ||||| || | | | ||||||| |||||| || |||||||| | ||||| || ||||| Sbjct 2876 GTATATGGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATT 2935 Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 ||||| || || | |||||| | | ||||| || | |||| || || | || Sbjct 2936 ATTATACACCCTAATCATTGGAATTAACCCATTAGACACACCAAGTGTACCAGCTATTGG 2995 Query 48449 ACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATAT 48508 |||| || |||| ||| | || || || || ||||| || |||| || Sbjct 2996 TGTTCCTCTTGCTCGAATACAATGAACGTTAAGCCCAATGCCACCAGCTGATTTACTGAT 3055 Query 48509 TAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAA 48568 || ||||||| ||| | || |||||||| || ||||||||||| || |||| | | Sbjct 3056 AAGCGCACACCTTTTTAATGTGTCATAAATGCCATCTATACTATCTTCAGTCATCGTCAG 3115 Query 48569 TAGAAAACAACTA 48581 ||||| |||||| Sbjct 3116 AAGAAAGCAACTA 3128 Score = 102 bits (112), Expect = 9e-17 Identities = 197/285 (69%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 |||||||| ||| | |||| | || | || | |||||| |||||||| |||| Sbjct 3225 CTAGACATCTGCTGCCTCAAAGTACATGCAGAGAAGAGTGTTGGTGATGCATGTGTAAAA 3284 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 | |||||||| || || |||||||| ||| | || || || ||| ||| Sbjct 3285 TAACGTTCTGATAAGAAATTGTATGTTTCTATAGCTCTGTCAATGTCTTCACCATGGATA 3344 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 | | || || | ||||||||||| ||||||||| || |||| ||| || ||| || Sbjct 3345 GCAACTGAAACCCTCATTAACATATGTTGAGGTCTCTCGACAACTTTCCCATGTATCTTT 3404 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTAT 48816 | | ||| | |||| | ||||||||||||||||| ||||| ||||| || | | Sbjct 3405 AGTAAATAACTTCTTTCAAGAGTTTTAAAACCAAAATAATTGTAACTGAAA--TCTCTGT 3462 Query 48817 CATTAATAATTGATGAATTTA--TTCTTT-CCTTATGTTTATATA 48858 ||| ||| |||| ||||||| || ||| | |||| ||| |||| Sbjct 3463 CATAAATTATTGCCGAATTTAATTTATTTGCATTAT-TTTGTATA 3506 >seq136 Length=558006 Score = 113 bits (124), Expect = 5e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 ||||| | ||||||||||||||| |||||||||||||| || || || || ||||| | | Sbjct 337517 TTAGAAAGATCTACTTCTTCAACAGTCCAAAAAGAAGCTTCGGCCTTCTTGTACATTTGC 337458 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATA 19569 || ||||| | | || |||||||||| |||||||||| | ||| |||||||| | Sbjct 337457 CAAATATCGGGCCACTGAATAGGAAATACAACAAATCTACGTGGATTATCTTTAAGTAAT 337398 Query 19570 GGTTCCATTT 19579 ||||||| || Sbjct 337397 GGTTCCAATT 337388 Score = 109 bits (120), Expect = 6e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 19230 AACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTG 19289 || ||| | ||| || || ||| |||||||||||||| | |||||| || || | || Sbjct 337829 AATATAAGTATCAATTAACAAAGAATACATTTCTGAATGCACATTTTCCATGGCAACTTG 337770 Query 19290 AAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAA 19349 || || ||||| || | ||| ||||| || || ||||| || |||| |||||| | Sbjct 337769 GAAACCATAAAAGCAACGTGCCTCTGTGATTTGCACTTCCTGACTGAATCGTTCGACAAG 337710 Query 19350 ATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATG 19397 ||| ||||| || |||||||| |||||||| ||||| |||||||| Sbjct 337709 ATTCTCATTGACAATTCCATCGGAGGCTGCAAAGAATGCCAATACATG 337662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562079443867920