Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq13 105 5e-18 seq413 102 6e-17 seq28 84.2 2e-11 >seq13 Length=4112475 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || |||||| ||| || || || ||||| || || || ||| Sbjct 3685697 AGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTC 3685638 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||| || ||||| |||| ||||| || || | |||| || || Sbjct 3685637 CCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCT 3685578 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| || | | | ||||| || || ||||||| || Sbjct 3685577 TTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTACCTCCAGGGTG 3685518 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| |||||||||||||||||||| Sbjct 3685517 ATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 3685480 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || |||||| |||||| || || ||||| || || || ||| Sbjct 3687258 AGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTC 3687199 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||| || ||||| |||| ||||| || || | |||| || || Sbjct 3687198 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCT 3687139 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || ||| | | | ||||| ||||| ||||||| || Sbjct 3687138 TTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAGGTG 3687079 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||||||||| || ||||| Sbjct 3687078 ATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687041 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || |||||| |||||| || || ||||| || || || ||| Sbjct 3687942 AGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTC 3687883 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||| || ||||| |||| ||||| || || | |||| || || Sbjct 3687882 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCT 3687823 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||||| || ||| | | | ||||| ||||| ||||||| || Sbjct 3687822 TTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTACCTCCAAGGTG 3687763 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||||||||| || ||||| Sbjct 3687762 ATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687725 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || |||||| |||||| || || ||||| || || || ||| Sbjct 3688170 AGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTC 3688111 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||| || ||||| |||| ||||| || || | |||| || || Sbjct 3688110 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCT 3688051 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| || | | | ||||| ||||| ||||||| || Sbjct 3688050 TTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTG 3687991 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||||||||| |||||||| Sbjct 3687990 ATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687953 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || |||||| |||||| || || ||||| || || || ||| Sbjct 3685925 AGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTTCTC 3685866 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||| || ||||| |||| ||||| || || | |||| || || Sbjct 3685865 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCT 3685806 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| || | | | ||||| ||||| ||||||| || Sbjct 3685805 TTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTG 3685746 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||||||||| || ||||| Sbjct 3685745 ATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3685708 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||||| || |||||| ||||||||| || ||||| || || || ||| Sbjct 3687486 AGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGCGTTCTC 3687427 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| || ||||| |||| ||||| || || | |||| || || Sbjct 3687426 CCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATTCCTTCT 3687367 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || || | | | ||||| || || ||||||| || Sbjct 3687366 TTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTACCTCCAGGGTG 3687307 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | ||||||||||| |||||||| Sbjct 3687306 ATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || |||||| ||| || || || ||||| || || || ||| Sbjct 3687714 AGTCGAAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTC 3687655 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| ||||| || ||||| |||| ||||| || || | || | || || Sbjct 3687654 CCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGCATTCCTTCT 3687595 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| ||| || | | | ||||| ||||| ||||||| || Sbjct 3687594 TTATCTTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTG 3687535 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||||| | ||||||||||| |||||||| Sbjct 3687534 ATGATTTTCCCCGTGAGCGTTTTTACAAAGATCTGCAT 3687497 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || |||| || || || || ||||| | || ||| ||||| || ||||| || || Sbjct 3688407 CCCCCCCGAAGACGTAATACTAAATGCAATGTAGACTCCTTTTGGATGTTGTAGTCTGAG 3688348 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| |||| |||| || || || ||||| |||| ||||| || || | ||| Sbjct 3688347 AGCGTTCTCCCGTCTTCCAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 3688288 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || || || |||||| ||| || | | | ||||| ||||| ||| Sbjct 3688287 ATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACC 3688228 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || || | ||||||||||| |||||||| Sbjct 3688227 TCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3688181 >seq413 Length=693780 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||| ||||||||||| || || | || | || || || || || || || || | Sbjct 292391 CTTTTTGGATATTGTAATCGGAGAGGGTGCGTCCATCTTCTAATTGTTTCCCAGCGAAAA 292332 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | ||||| || ||||| | |||| || |||||||| |||||| || ||| Sbjct 292331 TAAGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTT 292272 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| || || ||||| | ||||| ||||| ||||| | |||||||| | Sbjct 292271 CAATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGA 292212 Query 48757 AAATCTGCATCGTG 48770 | |||||||||||| Sbjct 292211 ATATCTGCATCGTG 292198 >seq28 Length=1782156 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| ||||||||||| || | || |||| || | || ||||| || || Sbjct 1076935 TCCTTTTGAATGTTGTAATCAGAAAGTATACGCCCGTCCTCGAGTTGTTTACCAGCGAAA 1076994 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||| ||||| | || | || ||||| || ||| || ||| ||| Sbjct 1076995 ATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTT 1077054 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| || || || |||| || || |||||||| || | ||| || || Sbjct 1077055 TCAATAGTATCTGAAGCTTCAACTTCCAAAGTGATAGTTTTTCCTGTAAGAGTCTTAACG 1077114 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 1077115 AAAATTTGCAT 1077125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380918202895494