Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq413 91.5 1e-13 seq28 89.7 4e-13 seq13 87.8 2e-12 >seq413 Length=693780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| |||||||| | |||||||||||||||||| || ||| ||||| Sbjct 292202 ATGCAGATATTCGTAAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTAGAAGCTTCA 292261 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||| ||| ||||| || ||| | || |||||| Sbjct 292262 GACACTATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 292321 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||||| || || || |||||||| |||||| || | ||||||| || Sbjct 292322 CAACGACTTATTTTCGCTGGGAAACAATTAGAAGATGGACGCACCCTCTCCGATTACAAT 292381 Query 28734 ATTCAAAAAG 28743 || ||||||| Sbjct 292382 ATCCAAAAAG 292391 >seq28 Length=1782156 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || | || || ||||||||||| ||| ||| | || Sbjct 1076669 ATGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATTACTTTGGAAGTTGAAGCATCG 1076610 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || |||||||| ||| | || |||||| Sbjct 1076609 GACACTATTGAGAATGTAAAAGCAAAAATTCAG-GACAAAGAAGGAATTCCGCCAGATCA 1076551 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CTAAAACTATGGCCGATTAT 28730 |||||| | |||||||| || || ||| | |||||| | | ||| | | |||||| Sbjct 1076550 GCAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTTT--CTGATTAT 1076493 Query 28731 AACATTCAAAAAGAATCTACTCTGCA 28756 |||||||| |||||||| ||||| || Sbjct 1076492 AACATTCAGAAAGAATCAACTCTTCA 1076467 >seq13 Length=4112475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||||||||| | || || |||||||| ||| || || |||| Sbjct 3687040 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687099 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| ||| || || ||||| ||| | || ||| || Sbjct 3687100 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687159 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| ||||| ||| |||||||| | ||| | | || || || Sbjct 3687160 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687219 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || ||||| || || || ||| |||| | || | |||||||| || Sbjct 3687220 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAAT 3687270 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||||||||| | || || |||||||| ||| || || |||| Sbjct 3687724 AATGCAAATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCTTGGAGGTAGAGGCTTC 3687783 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | ||| ||| || || ||||| ||| | || ||| || Sbjct 3687784 AGACACAATAGAGAATGTGAAGGCAAAGATTCAAGATAAAGAAGGAATTCCTCCAGACCA 3687843 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | |||||||| ||||| ||| |||||||| | ||| | | || || || Sbjct 3687844 GCAGCGTTTGATCTTTGCTGGCAAGCAACTGGAAGATGGGAGAACGCTCTCAGACTACAA 3687903 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || ||||| || || || ||| |||| | || | |||||||| || Sbjct 3687904 CATCCAGAAAGAGTCCACGCTTCACTTGGTGCTGCGACTTCGAGGAGGAAT 3687954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425383138653462