Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq111 113 2e-20 >seq111 Length=5712365 Score = 113 bits (124), Expect = 2e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058 ||||||||| |||||||| || ||||||||||||| |||||||| ||||| || || || Sbjct 2825 ATTCTTTTTGAGATCTAAAAATTCAAAAATATCTGCATGCCATGGCTCTAAGTATATGGC 2884 Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 ||| ||| |||||| |||||||||||| |||||||| || || | ||| | || Sbjct 2885 AAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACGTATCTAGCTGTATTATTATACAC 2944 Query 26119 TTTCAACATTGGAACTAATCCA 26140 | | |||||||| ||| ||| Sbjct 2945 CCTAATCATTGGAATTAACCCA 2966 Score = 89.7 bits (98), Expect = 3e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTC 25074 |||||||||||||| |||| ||| | | | ||| || ||||||||| | | || Sbjct 1482 AAATTCTCCAGACAGTACTCGCCTTGTATAGATGTTACTCGTATATGGTTCAACAGACTC 1541 Query 25075 ATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATT 25134 |||||||||||| || || | ||||| ||||||||||| ||| ||||| | ||||| Sbjct 1542 ATTATTTCCTAAAATCTGTGCGGTAGAAGCTGTTGGCATAGGTGCAATTAACAAAGAATT 1601 Query 25135 TCTCAAACCATATTTAACAATCTCTTGTTTTAAT 25168 ||| | || | ||| |||| | || ||| ||| Sbjct 1602 TCTAACTCCGTGTTTTGCAATTTTTTCTTTCAAT 1635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253027115361350