Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq140 109 2e-18 seq260 95.1 4e-14 seq212 87.8 5e-12 seq155 87.8 5e-12 seq23 87.8 5e-12 >seq140 Length=1552015 Score = 109 bits (120), Expect = 2e-18 Identities = 189/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||||||||| || || ||| | ||||||||||| ||| Sbjct 444503 TCCATAGCCTTTATCAGACGACGCTGAATGTACCCGGTTTCGGCGGTTTTTACAGCAGTA 444562 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| |||||||| ||||| | | ||| |||| | || Sbjct 444563 TCGATAAGACCCTCACGACCTCCCATAGCGTGGAAATAAAACTCAGACGGTGTCAAACCG 444622 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || |||| ||||| || | | ||| || || ||||||| || | Sbjct 444623 GCAAGATATGAATTCTCGACGAATCCCCTTGACTCAGGACCGTAATCGTC---TTTAATG 444679 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || ||||| ||||| ||| ||||| | || || || || || ||||||||||| Sbjct 444680 AAATGCGGCAGTGTCCTCTTCCGGAAGCCGAACGGTATTCGTTTACCTTCAACGTTCTGT 444739 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || || | || | || | ||| ||||| || Sbjct 444740 TGACCGACACAAGCGATAACCTGAGAAATGTT 444771 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 301815 AATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 |||||| |||||| | ||| |||||| |||||||||| ||| |||| |||||||||| Sbjct 443571 AATTTCCTTCAAT-CTGGGCACACCAAGGGTTACGTT---CTTCGACGACACACCAGCAA 443626 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 |||||||||| |||| || | ||||| | ||| || |||| || || || | Sbjct 443627 AGTGGAAAGTGTTCAATGTCATCTGAGTGGCTGGTTCGCCAAGCGACTGGGCGGCCAAAG 443686 Query 301934 TACCAACCATTTCTCCTGGTGCTAC 301958 ||||||||| || || |||| ||| Sbjct 443687 CACCAACCATCTCACCAGGTGATAC 443711 >seq260 Length=388738 Score = 95.1 bits (104), Expect = 4e-14 Identities = 119/161 (74%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 252530 TATCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCAC 252589 ||||||| | || | ||||||| | |||| || | ||||| || |||||||||| Sbjct 64444 TATCCATGCGTACATGAAAATTTGTGATGTACACTCCCATAGCCTGTTTACCCATAGCAC 64503 Query 252590 TCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA- 252648 | || ||||| ||||| ||| |||||||| ||||| || ||||| ||| || ||| Sbjct 64504 TTTGATAAGTGTTTCTTGGACTCTGATTGTGATCCGGAAATGGAATAATTGAAGC-ACAT 64562 Query 252649 ACACCGAAGATAGTGCTTGGGTGAATTTCACAGTGACTGTA 252689 ||||| || || || ||| |||||||||||||| |||| Sbjct 64563 ACACCTAAAATCATGGCTGGATGAATTTCACAGTGTGTGTA 64603 >seq212 Length=110780 Score = 87.8 bits (96), Expect = 5e-12 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 60164 GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTA 60223 ||||| || || |||||| | || | || || ||||| || || ||| ||| ||||||| Sbjct 29379 GCTGCATCTTTTCCACCCGTTAGTCTTGTACCGAATTGACCATTAGGCAGGAGTAGATTA 29320 Query 60224 ATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAG-CACCATTTAAACTGGC 60282 || || || |||||||||||||| || || || | ||||| | ||| || || | Sbjct 29319 ATATTATTGCTTCCTACGAAATTTTGCGCAAGCCCGATAATAGTCGACAT---AAGTGAC 29263 Query 60283 --TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTA 60340 ||||||||||||||| | ||||| || | ||| | ||| || || || ||||| Sbjct 29262 ATTTCACCGTGATGATACGCCGAATGCTCAGCCACAGAACCAGCCAACTGAGCAACTTTC 29203 Query 60341 ATTTC 60345 | ||| Sbjct 29202 ACTTC 29198 >seq155 Length=456508 Score = 87.8 bits (96), Expect = 5e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGATTTTC 106983 |||||||||||| || || || ||||| |||| || || || | | ||| | ||| Sbjct 32620 CATACCATAGAATAATTTAAATTTTTTCCCATTTTTTTCTATAATTTCTCCTCCACATTC 32679 Query 106984 ATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTTT 107043 ||||||||| ||||| | ||| || ||||||| ||||| || || | || || || || Sbjct 32680 ATCGTGTCCAGCAAACATACCACCTGCCATTACAAAATCTGCTCCTGCTCCAAAAGCCTT 32739 Query 107044 AGCCATATCACCAGGGCAAGT 107064 |||| ||| ||||| ||||| Sbjct 32740 TGCCAAATCCCCAGGACAAGT 32760 >seq23 Length=5124345 Score = 87.8 bits (96), Expect = 5e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||| |||||| |||||| |||||||||||||| | | | ||| || || || Sbjct 913404 GCACCGTATCCAATCAAACAATCCCGTTCCATTTCACCTAATCTTAAACCTCCCTCTTTG 913463 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 | | ||| | | || |||||| || || |||| ||| ||||| ||||||| || Sbjct 913464 GCACGACCTTCGGTTGGTTGACGTGTCAATACAGCTCTCGGACCTCGAGCACGGGCATGC 913523 Query 233393 ATTTTATCTTTAACCATATGCTTCAG 233418 |||||||||| ||||| ||||| || Sbjct 913524 ATTTTATCTTGTACCATGTGCTTTAG 913549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471738812683986