Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq832 105 1e-16 seq237 102 1e-15 seq19 100 5e-15 >seq832 Length=5109 Score = 105 bits (116), Expect = 1e-16 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||| || ||| |||||| || || ||| Sbjct 3582 TGTACTTGGTGACAGCCTTGGTTCCCTCACTGACAGCATGCTTGGCCAACTCTCCAGGCA 3523 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| || || || |||||||| || || ||| || ||||||||| | Sbjct 3522 AAAGCAGGCGAACAGCCGTTTGGATCTCCCGACTGGTGATGGTCGAGCGCTTGTTGTAGT 3463 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || |||| | || || |||| || || || ||||| ||||| Sbjct 3462 GAGCTAGACGAGACGCTTCGGCAGCAATTCGCTCGAAAATATCATTTACAAAGCTGTTCA 3403 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| || || || || ||| || || ||||||||||| ||||||| Sbjct 3402 TTATGCTCATCGCCTTCGACGAAATTCCGGTGTCAGGATGGACCTGCTTGAGAACCTTGT 3343 Query 1485710 AAA 1485712 ||| Sbjct 3342 AAA 3340 >seq237 Length=2179369 Score = 102 bits (112), Expect = 1e-15 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||| |||||||| || |||||||||| |||| ||||| || ||| Sbjct 1062014 TGTATTTGGTGACGGCTTTGGTACCTTCGCTGACGGCGTGCTTGGCGAGTTCACCAGGCA 1061955 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || |||||||||||||| || | ||| ||| || ||||| Sbjct 1061954 GGAGTAGACGGACAGCGGTCTGGATCTCCCGAGATGTGATTGTGGAACGTTTGTTGTAAT 1061895 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || || | | || || |||| | || || ||||| ||||| Sbjct 1061894 GAGCCAAACGGGATGCTTCAGCAGCAATACGTTCGAAGACATCATTCACAAAACTGTTCA 1061835 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| ||||||| || ||||| || || || || || || |||| Sbjct 1061834 TGATGCTCATCGCTTTACTGGAGATACCAGTATCGGGATGTACTTGTTTCAGGACTTTGT 1061775 Query 1485710 A 1485710 | Sbjct 1061774 A 1061774 Score = 100 bits (110), Expect = 5e-15 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||| ||||| |||| ||||| ||| ||| Sbjct 1050418 TGTACTTGGTGACCGCTTTGGTGCCTTCGCTGACCGCGTGTTTGGCAAGTTCCCCGGGCA 1050477 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || |||||||| | || | | ||| ||| | || ||||| | Sbjct 1050478 ATAAGAGTCGAACCGCGGTCTGTACTTCCCTCGACGTGATTGTGCTCCGTTTGTTGTAGT 1050537 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || | | ||||||| |||| || |||| || ||||| || || ||||| Sbjct 1050538 GCGACAATCTGGACGCCTCGGCCGCGATACGCTCGAATATATCGTTCACGAAACTGTTCA 1050597 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| | | || || ||| ||| || ||||| || ||||||||||||| Sbjct 1050598 TGATGCTCATCGCACGGCTCGATATACCCGTGTCCGGATGCACTTGTTTGAGCACCTTGT 1050657 Query 1485710 AAA 1485712 ||| Sbjct 1050658 AAA 1050660 >seq19 Length=5541665 Score = 100 bits (110), Expect = 5e-15 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| ||| |||||| | |||| ||| ||| ||| Sbjct 2842897 TGTATTTGGTAACCGCCTTGGTACCCTCGCTGACTGCGTGCTTAGCCAATTCACCGGGCA 2842838 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||| || ||||| ||||| || | ||| || || ||||| Sbjct 2842837 GCAGGAGTCTCACAGCAGTCTGAATCTCCCGAGACGTGATAGTTGAACGTTTGTTGTAAT 2842778 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGAC-AAACGAGTTC 1485648 | |||| | | || |||| | ||||| |||| | ||| ||||| |||| | ||| Sbjct 2842777 GGGCCAATCTGGATGCTTCGGCTGCAATGCGCTCGAATACGTCATTGACGAAACTA-TTC 2842719 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| |||| ||||||| || ||||| ||||| ||||| || || ||| Sbjct 2842718 ATGATGCTCATCGCTTTGCTGGAGATACCGGTATCGGGATGCACTTGCTTCAGAACTTTG 2842659 Query 1485709 TA 1485710 || Sbjct 2842658 TA 2842657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915801967084142