Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq28 127 1e-24 seq13 125 5e-24 seq413 91.5 1e-13 >seq28 Length=1782156 Score = 127 bits (140), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || || ||||||| || || | |||||||||||||| || || || || ||||| |||| Sbjct 1078054 AGTACAAGGTGAAGTGTTGAT-TCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATC 1078112 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || || |||||||| | || |||||||||| | || | || ||||| || Sbjct 1078113 TTCAAGTTGTTTACCAGCGAAGATTAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATC 1078172 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | |||||| |||||| | | || | || ||||| || |||| |||||| || Sbjct 1078173 TTGAATTTTTGCTTTGACATTTTCAATGGTATCTGATGCCTCAACCTCAAGGGTTATTGT 1078232 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | ||||| ||||||||||||||| Sbjct 1078233 TTTACCAGTCAATGTCTTAACAAAGATCTGCATG 1078266 Score = 116 bits (128), Expect = 2e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || || ||||||| || || | |||||||||||||| || || || || ||||| |||| Sbjct 1076686 AGTACAAGGTGAAGTGTTGAT-TCCTTCTGAATGTTGTAATCTGAAAGTGTGCGCCCATC 1076744 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || || |||||||||| || ||||| ||| | || | || ||||| || Sbjct 1076745 CTCAAGTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCCTTATC 1076804 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| |||||| | | || | ||| ||| ||||| || | || ||||| Sbjct 1076805 TTGAATTTTGGCTTTGACATTTTCAATAGTGTCAGAGGCTTCGACTTCCAAAGTGATGGT 1076864 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || ||||| ||||| Sbjct 1076865 TTTTCCTGTAAGAGTCTTGACGAAGATTTGCAT 1076897 Score = 113 bits (124), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| ||||| || || || |||| |||| || ||||| || || |||||| Sbjct 1077619 TCCTTCTGAATATTATAATCTGAAAGTGTGCGTCCATCCTCAAGTTGTTTACCAGCGAAG 1077678 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || |||||||||| | || | || ||||| || | |||||| || || || Sbjct 1077679 ATCAATCTTTGCTGGTCTGGTGGGATTCCTTCCTTATCTTGAATTTTTGCCTTTAC--AT 1077736 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | ||| ||| || || || | || ||||| ||||| ||||| ||||| | Sbjct 1077737 TCTCAATAGTGTCAGAGGCTTCAACTTCCAAAGTGATGGTTTTTCCTGTGAGAGTCTTAA 1077796 Query 34965 CAAAGATCTGCAT 34977 ||||||| ||||| Sbjct 1077797 CAAAGATTTGCAT 1077809 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||||||||| || || || ||||| |||| || ||||||||||| || ||| Sbjct 1076479 TCTTTCTGAATGTTATAATCAGAAAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAG 1076538 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| ||| |||| | || || ||||| | |||||| ||| || || Sbjct 1076539 ATCAATCTCTGCTGATCTGGCGGAATTCCTTCTTTGTCCTGAATTTTTGCTTTTAC--AT 1076596 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || || || || || | || ||||| ||||| || || ||||| | Sbjct 1076597 TCTCAATAGTGTCCGATGCTTCAACTTCCAAAGTAATGGTTTTTCCTGTAAGAGTCTTGA 1076656 Query 34965 CAAAGATCTGCAT 34977 | ||||| ||||| Sbjct 1076657 CGAAGATTTGCAT 1076669 Score = 100 bits (110), Expect = 2e-16 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || || || |||| || || | ||||||||||| ||||| || || || ||||| |||| Sbjct 1077826 AGTACAAGATGAAGTGTTGAT-TCCTTCTGAATATTATAATCTGAAAGTGTGCGCCCATC 1077884 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| || || |||||||||| || ||||| ||| | || | || ||||| || Sbjct 1077885 CTCAAGTTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGTGGGATTCCTTCCTTATC 1077944 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | |||||| || || || || || | || || || || || | ||| || Sbjct 1077945 TTGAATTTTTGCCTTTAC--ATTCTCAATAGTGTCGGATGCTTCAACTTCCAAGGTGATC 1078002 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| ||||| ||||| |||||||| ||||| Sbjct 1078003 GTTTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 1078037 >seq13 Length=4112475 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||||||| ||||| ||||| || ||| | | | | || Sbjct 3687708 AGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTTCTCCCGTCT 3687649 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || || ||||||| || ||||||||| | |||| || || || || Sbjct 3687648 TCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGCATTCCTTCTTTATCT 3687589 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||| ||| | |||| | || ||||| || || | ||| ||| | Sbjct 3687588 TGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGATT 3687529 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| || ||||||||||||||||| Sbjct 3687528 TTCCCCGTGAGCGTTTTTACAAAGATCTGCAT 3687497 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||| ||||| ||| ||| ||||| ||||| ||||| | Sbjct 3688181 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTG 3688122 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | |||| ||||||||||| || || ||||||| || ||||||||| | | Sbjct 3688121 AGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3688062 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || || ||| ||| | |||| | || ||||| | Sbjct 3688061 GAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTA 3688002 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || ||||| || ||||||||||||||||| Sbjct 3688001 CCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687953 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||| ||||| ||| ||| ||||| ||||| ||||| | Sbjct 3685936 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTG 3685877 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | |||| ||||||||||| || || ||||||| || ||||||||| | | Sbjct 3685876 AGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3685817 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || || ||| ||| | |||| | || ||||| | Sbjct 3685816 GAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTTTTCTATTGTGTCTGAAGCCTCTA 3685757 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || ||||| || ||||||||||| ||||| Sbjct 3685756 CCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3685708 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||| ||||| ||| ||||||||| ||||| ||||| | Sbjct 3685708 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCTG 3685649 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | | | | || ||||||||||| || || ||||||| || ||||||||| | | Sbjct 3685648 AGAGGGTTCTCCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3685589 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || || ||| ||| |||| | || || || | Sbjct 3685588 GAATTCCTTCTTTATCTTGAATCTTCGCTTTCACGTTCTCTATGGTGTCTGAAGCTTCTA 3685529 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || || || || |||||||| |||||||| Sbjct 3685528 CCTCCAGGGTGATGGTTTTCCCAGTCAGTGTTTTTACAAAAATCTGCAT 3685480 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||| ||||| ||| ||| ||||| ||||| ||||| | Sbjct 3687269 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTG 3687210 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | |||| ||||||||||| || || ||||||| || ||||||||| | | Sbjct 3687209 AGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3687150 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || ||| || || |||| | || ||||| | Sbjct 3687149 GAATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTA 3687090 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || ||||| || ||||||||||| ||||| Sbjct 3687089 CCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687041 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||| ||||| ||| ||| ||||| ||||| ||||| | Sbjct 3687953 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTCTGGATGTTGTAGTCTG 3687894 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | |||| ||||||||||| || || ||||||| || ||||||||| | | Sbjct 3687893 AGAGCGTTCTCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3687834 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || ||| || || |||| | || ||||| | Sbjct 3687833 GAATTCCTTCTTTATCTTGAATCTTTGCCTTCACATTCTCTATTGTGTCTGAAGCCTCTA 3687774 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || ||||| || ||||||||||| ||||| Sbjct 3687773 CCTCCAAGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATTTGCAT 3687725 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||| ||||| ||| ||| || || ||||| ||||| | Sbjct 3687497 TTCCTCCTCGAAGTCGCAGCACCAAGTGAAGCGTGGACTCTTTTTGGATGTTGTAGTCTG 3687438 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | | || || |||||||| || || ||||||| || ||||||||| | | Sbjct 3687437 AGAGCGTTCTCCCGTCTTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 3687378 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | ||| || || ||| |||| | || || || | Sbjct 3687377 GAATTCCTTCTTTATCTTGTATCTTCGCCTTCACGTTCTCTATTGTGTCTGAAGCTTCTA 3687318 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || ||||| || ||||||||||||||||| Sbjct 3687317 CCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTACAAAGATCTGCAT 3687269 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| ||||| || || | | | | || |||||||| || || || || Sbjct 3688372 CTCCTTTTGGATGTTGTAGTCTGAGAGCGTTCTCCCGTCTTCCAGTTGTTTGCCAGCAAA 3688313 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||||||| | || | || || || || | || || ||| ||| Sbjct 3688312 GATCAAACGCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGAATCTTCGCTTTCACGTT 3688253 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| | || ||||| || || | ||| ||||| || || ||||| || ||||| Sbjct 3688252 TTCTATTGTGTCTGAAGCCTCTACCTCCAGGGTGATGGTTTTCCCTGTGAGCGTTTTTAC 3688193 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 3688192 AAAGATCTGCAT 3688181 >seq413 Length=693780 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || || || || || || || ||| |||| |||| || | ||| || || ||||| || Sbjct 292389 TTTTGGATATTGTAATCGGAGAGGGTGCGTCCATCTTCTAATTGTTTCCCAGCGAAAATA 292330 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||||||||| ||| | || | || |||||||| | || ||| || || | | Sbjct 292329 AGTCGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCA 292270 Query 34910 ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 || | || || || || |||| ||| ||||| || ||||||||||| ||||| || Sbjct 292269 ATAGTGTCTGAAGCTTCTACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAT 292210 Query 34970 ATCTGCAT 34977 |||||||| Sbjct 292209 ATCTGCAT 292202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325676215926182