Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dufourea_20novaeangliae_20[refseq_20GCF_5F001272555.1_202015-08-21] 4,178 sequences; 279,505,983 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq28 123 4e-23 seq413 107 3e-18 seq299 105 1e-17 seq13 84.2 3e-11 >seq28 Length=1782156 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||||||||| || ||| | || || ||| | | Sbjct 1077352 TGCAAATTTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCAG 1077293 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| ||| ||||| || ||||||||||| | Sbjct 1077292 ATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAGC 1077233 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | ||||| || ||||||||| | || || | || | | ||||| || | Sbjct 1077232 AGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAACA 1077173 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| ||| | || | ||| | ||||| || || |||| Sbjct 1077172 TCCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGGGGTGGTA 1077125 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||||||||| || ||| | || || ||| | | Sbjct 1077580 TGCAAATCTTCGTTAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTTGAAGCTTCAG 1077521 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| ||| ||||| || ||||||||||| | Sbjct 1077520 ATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCCGATCAGC 1077461 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | ||||| || ||||||||| | || || | || | | ||||| || | Sbjct 1077460 AGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGACGTACACTTTCTGATTACAACA 1077401 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| ||| | || | ||| | ||||| || || |||| Sbjct 1077400 TCCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGGGGTGGTA 1077353 Score = 118 bits (130), Expect = 2e-21 Identities = 164/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || | ||||||||||| |||||| | || || ||| ||| Sbjct 1076668 TGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATTACTTTGGAAGTTGAAGCAT-CG 1076610 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | ||||||||| ||||| || |||||||| ||||| || ||||| Sbjct 1076609 GACACTATTGAGAATGTAAAAGCAAAAATTCAGGACAAAGAAGGAATTCCGCCAGATCAG 1076550 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || ||||| || || ||| | || ||| | || | | |||||||| Sbjct 1076549 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTTTCTGATTATAAC 1076490 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || |||||||| ||| | |||||||| | ||| | ||||| || Sbjct 1076489 ATTCAGAAAGAATCAACTCTTCATTTAGTTCTTCGACTTAGAGGTGG 1076443 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||||||||| || ||| | || || ||| | | Sbjct 1077124 TGCAAATTTTCGTTAAGACTCTTACAGGAAAAACTATCACTTTGGAAGTTGAAGCTTCAG 1077065 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| ||| ||||| || ||||| ||||| | Sbjct 1077064 ATACTATTGAAAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAGC 1077005 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | ||||| || ||||||||| | || || | | | | ||||| || | Sbjct 1077004 AGAGATTGATTTTCGCTGGTAAACAACTCGAGGACGGGCGTATACTTTCTGATTACAACA 1076945 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| || | || | ||| | ||| | ||||| |||| Sbjct 1076944 TTCAAAAGGAATCTACACTTCACCTTGTACTTCGACTGAGAGGTGGTA 1076897 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | ||||||||||| || ||| | || || ||| | Sbjct 1077808 TGCAAATCTTTGTTAAGACTCTCACAGGAAAAACCATCACTTTGGAAGTTGAAGCCTCTG 1077749 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | |||||||| ||||| ||| ||| ||||| || ||||| || || | Sbjct 1077748 ACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGACCAGC 1077689 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || ||||||||| | || ||| | || | |||||||||||| Sbjct 1077688 AAAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGACGCACACTTTCAGATTATAATA 1077629 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| ||| |||| | ||| | ||| | ||||| |||| Sbjct 1077628 TTCAGAAGGAATCTACTCTCCACCTTGTACTTCGACTGAGAGGTGGTA 1077581 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || | || || | ||||||||||| || || | || || ||| ||| | Sbjct 1078036 TGCAAATCTTTGTTAAGACTCTCACAGGAAAAACGATCACCTTGGAAGTTGAAGCATC-C 1077978 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || |||||| | |||||||| ||||| ||| ||| ||||| || ||||| ||||| Sbjct 1077977 GACACTATTGAGAATGTAAAGGCAAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAG 1077918 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || ||| | || || || ||||||||| | || ||| | || | ||||||||||| Sbjct 1077917 CAGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCAGATTATAAT 1077858 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || || ||||| || | ||| | ||| | ||| | ||||| |||| Sbjct 1077857 ATTCAGAAGGAATCAACACTTCATCTTGTACTCCGACTGAGAGGTGGTA 1077809 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | ||||||||||| || ||| | || || ||| | Sbjct 1076896 TGCAAATCTTCGTCAAGACTCTTACAGGAAAAACCATCACTTTGGAAGTCGAAGCCTCTG 1076837 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| ||| ||||| ||| ||| ||||| || || || ||||| | Sbjct 1076836 ACACTATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAGC 1076777 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || ||||||||| | || ||| | || | ||||||| || | Sbjct 1076776 AGAGATTGATCTTCGCTGGTAAACAACTTGAGGATGGGCGCACACTTTCAGATTACAACA 1076717 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| || | || | ||| | ||| | ||||| |||| Sbjct 1076716 TTCAGAAGGAATCAACACTTCACCTTGTACTTCGACTGAGAGGTGGTA 1076669 >seq413 Length=693780 Score = 107 bits (118), Expect = 3e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| ||||||| | || || ||||| ||||| |||| |||||| | | Sbjct 292203 TGCAGATATTCGTAAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTAGAAGCTTCAG 292262 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || || || || || ||||| ||||| || ||||| | Sbjct 292263 ACACTATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAGC 292322 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || |||| ||||| || || ||||||||||| ||| | || | | ||||| |||| Sbjct 292323 AACGACTTATTTTCGCTGGGAAACAATTAGAAGATGGACGCACCCTCTCCGATTACAATA 292382 Query 146212 TACAAAAAG 146220 | ||||||| Sbjct 292383 TCCAAAAAG 292391 >seq299 Length=124767 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 |||||||||||| ||||| |||||| | |||||||| || ||||| |||| ||| | | Sbjct 103269 AGGCATTCCACCAGATCAGCAAAGATTAATTTTTGCTGGAAAACAGCTAGAAGATGGTCG 103328 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| | ||||||||||||| || |||||||| ||| | ||||| || ||||| || | Sbjct 103329 AACCCTTTCAGATTATAATATTCAGAAAGAATCTACTTTGCATTTGGTCTTACGTCTACG 103388 Query 146252 AGGAGG 146257 ||| || Sbjct 103389 AGGTGG 103394 >seq13 Length=4112475 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| | ||||| ||||| || || | || ||||| | | Sbjct 3688182 TGCAGATCTTTGTAAAAACGCTCACAGGGAAAACCATCACCCTGGAGGTAGAGGCTTCAG 3688241 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| || ||| || || || ||||||||| ||||| || || || | Sbjct 3688242 ACACAATAGAAAACGTGAAAGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGACCAGC 3688301 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || |||||| | || || |||||| | |||| || || | Sbjct 3688302 AGCGTTTGATCTTTGCTGGCAAACAACTGGAAGACGGGAGAACGCTCTCAGACTACAACA 3688361 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| || || || | |||||||||||||| Sbjct 3688362 TCCAAAAGGAGTCTACATTGCATTTAGTATTACG 3688395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786125342459760